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Protein
Submitted name:

Putative TetR family transcriptional regulator

Gene

KRH_20970

Organism
Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationSAAS annotation

Keywords - Ligandi

DNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciKRHI378753:GJ8F-2154-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative TetR family transcriptional regulatorImported
Gene namesi
Ordered Locus Names:KRH_20970Imported
OrganismiKocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)Imported
Taxonomic identifieri378753 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeMicrococcaceaeKocuria
ProteomesiUP000008838 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi378753.KRH_20970.

Structurei

3D structure databases

ProteinModelPortaliB2GHG8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains HTH tetR-type DNA-binding domain.SAAS annotation

Phylogenomic databases

eggNOGiNOG116599.
OrthoDBiEOG6HB9PG.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2GHG8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEASAVTED VVTRSIRMLA DHGYMETTVE QLAQAAGISR ATFFRKYGSK
60 70 80 90 100
EDVVFADHAA TLERLEALLQ RPGLSPQDGL VEGAQLVFRH NLDHAQRAFA
110 120 130 140 150
RHDLLQRVES LRDREIAMSS RYERVFHAFL RAALPDSPDR RVTAVALPAA
160 170 180 190 200
TVAVHNAFLR TWLRGPRPGQ GEQLAAALSR RVVWLCALFG VIHQETAPSG
210 220 230 240 250
SPVDLSFSSA QVSLELDDAA APPYAHGSPS PAGRPTANDA ASSGAGAPGS
260 270 280 290 300
WSPAGATAPA GTSSSSDASA GDAAAPPGAA PSGPSSSGGT PSSPDVSADD
310 320 330 340 350
DAATQEAAPS GPQLLRGTPS ALYAPAEDDA ATPEADPPGS SAGAPVGGGV
360 370 380 390 400
DTARGRDVGA DPDGSAAGPG EHGEPALANP RGGVVGGNRT DTVWVGGDAP
410 420
IVVLVPRGGN PADVAERTAR SVYEALRG
Length:428
Mass (Da):43,581
Last modified:June 10, 2008 - v1
Checksum:i0BD71F63150B1D30
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009152 Genomic DNA. Translation: BAG30444.1.
RefSeqiWP_012399165.1. NC_010617.1.
YP_001855950.1. NC_010617.1.

Genome annotation databases

EnsemblBacteriaiBAG30444; BAG30444; KRH_20970.
KEGGikrh:KRH_20970.
PATRICi22184560. VBIKocRhi5258_2110.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009152 Genomic DNA. Translation: BAG30444.1.
RefSeqiWP_012399165.1. NC_010617.1.
YP_001855950.1. NC_010617.1.

3D structure databases

ProteinModelPortaliB2GHG8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi378753.KRH_20970.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAG30444; BAG30444; KRH_20970.
KEGGikrh:KRH_20970.
PATRICi22184560. VBIKocRhi5258_2110.

Phylogenomic databases

eggNOGiNOG116599.
OrthoDBiEOG6HB9PG.

Enzyme and pathway databases

BioCyciKRHI378753:GJ8F-2154-MONOMER.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 9341 / DSM 348 / NBRC 103217 / DC2201Imported.

Entry informationi

Entry nameiB2GHG8_KOCRD
AccessioniPrimary (citable) accession number: B2GHG8
Entry historyi
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: April 29, 2015
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.