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B2FU16 (B2FU16_STRMK) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative ATP-dependent DNA ligase EMBL CAQ43668.1
Gene names
Ordered Locus Names:Smlt0053
OrganismStenotrophomonas maltophilia (strain K279a) [Complete proteome] [HAMAP] EMBL CAQ43668.1
Taxonomic identifier522373 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Stenotrophomonas › Stenotrophomonas maltophilia group ›

Protein attributes

Sequence length828 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CAQ43668.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B2FU16 [UniParc].

Last modified June 10, 2008. Version 1.
Checksum: B66DCFCC2D0686C7

FASTA82891,328
        10         20         30         40         50         60 
MSLHQYRRKR RLGGGAGQTT EPDDTPAPGD PKQRPTFVIQ LHHASSRHYD FRLEMDGVLK 

        70         80         90        100        110        120 
SWAVPKGPSL RVGEKRLAVE VEDHPLSYAG FEGDIPEGHY GAGHVEVFDH GTWACEGDPL 

       130        140        150        160        170        180 
QALAAGKIDF VLHGQRLAGG WKLVRTAMKG RQVQWLLIKR GDGEARDAEA DDLLTAPMPK 

       190        200        210        220        230        240 
RTPAAKKRSA DKTARAAPVA RTTTRKADVR WHARALQLHG ARDAPYPHAF KPQLTDHRDS 

       250        260        270        280        290        300 
APDGDRWLHE IKWDGYRLLA DLHDGEVKLR SRNGLDWTDD FPEVVQAVQA LPVRDARLDG 

       310        320        330        340        350        360 
ELVVLDKEGR SDFAALQRVI DGSSKQPLRY IVFDLPGVAG ADISRAPLLE RKALLKELIG 

       370        380        390        400        410        420 
PAPGTLAFSE HVIDHGPQVF DASGKAGFEG TVSKQVDAPY VNTRARSWVK VKHEDTDEFL 

       430        440        450        460        470        480 
IVGYTAPKGS RVGFGSLLLA TPDKGGLRYV GRVGTGFDDQ SLRALLKALQ PLAVKTPVLQ 

       490        500        510        520        530        540 
LPAHVPFRAA SVRWVKPVAV AEVAFRGWGK EGLLRQASFK RLRSDKQKED LGMSTADTET 

       550        560        570        580        590        600 
GGEVEITHPE RVVFPRQKLR KGDVADYYQR MARWILPEIA GRPLSLLRCP DGVGKACFFQ 

       610        620        630        640        650        660 
KHHGPGLGDA VHAVPLQQKS GREDYVYVDD ARGLLQLVQM NTLELHPWGA TVADPEHPDR 

       670        680        690        700        710        720 
LVFDLDPGEG VSWAQVKAAA RDVRDRLQEV GLQSFVRLSG GKGVHVVVPL QPKAGWDEAK 

       730        740        750        760        770        780 
AFCEAFAQAM ALEQPDRYVA TMSKAKRGGV IFIDWLRNTR GATSVCSWSL RARDAAGVAV 

       790        800        810        820 
PLRWEELARV SAADAFPMAK ALARAKRLKG DPWQGIARLK QRLPSLKR

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References

[1]"The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants."
Crossman L.C., Gould V.C., Dow J.M., Vernikos G.S., Okazaki A., Sebaihia M., Saunders D., Arrowsmith C., Carver T., Peters N., Adlem E., Kerhornou A., Lord A., Murphy L., Seeger K., Squares R., Rutter S., Quail M.A. expand/collapse author list , Rajandream M.A., Harris D., Churcher C., Bentley S.D., Parkhill J., Thomson N.R., Avison M.B.
Genome Biol. 9:R74.1-R74.13(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K279a.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AM743169 Genomic DNA. Translation: CAQ43668.1.
RefSeqYP_001969984.1. NC_010943.1.

3D structure databases

ProteinModelPortalB2FU16.
ModBaseSearch...

Protein-protein interaction databases

STRING522373.Smlt0053.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAQ43668; CAQ43668; Smlt0053.
GeneID6391857.
KEGGsml:Smlt0053.
PATRIC23695853. VBISteMal45202_0046.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALVAECEF.
ProtClustDBCLSK299585.

Enzyme and pathway databases

BioCycSMAL522373:GJE8-50-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB2FU16_STRMK
AccessionPrimary (citable) accession number: B2FU16
Entry history
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: May 1, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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