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B2FU16

- B2FU16_STRMK

UniProt

B2FU16 - B2FU16_STRMK

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Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene
Smlt0053
Organism
Stenotrophomonas maltophilia (strain K279a)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSMAL522373:GJE8-50-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Smlt0053Imported
OrganismiStenotrophomonas maltophilia (strain K279a)Imported
Taxonomic identifieri522373 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
ProteomesiUP000008840: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi522373.Smlt0053.

Structurei

3D structure databases

ProteinModelPortaliB2FU16.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2FU16-1 [UniParc]FASTAAdd to Basket

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MSLHQYRRKR RLGGGAGQTT EPDDTPAPGD PKQRPTFVIQ LHHASSRHYD    50
FRLEMDGVLK SWAVPKGPSL RVGEKRLAVE VEDHPLSYAG FEGDIPEGHY 100
GAGHVEVFDH GTWACEGDPL QALAAGKIDF VLHGQRLAGG WKLVRTAMKG 150
RQVQWLLIKR GDGEARDAEA DDLLTAPMPK RTPAAKKRSA DKTARAAPVA 200
RTTTRKADVR WHARALQLHG ARDAPYPHAF KPQLTDHRDS APDGDRWLHE 250
IKWDGYRLLA DLHDGEVKLR SRNGLDWTDD FPEVVQAVQA LPVRDARLDG 300
ELVVLDKEGR SDFAALQRVI DGSSKQPLRY IVFDLPGVAG ADISRAPLLE 350
RKALLKELIG PAPGTLAFSE HVIDHGPQVF DASGKAGFEG TVSKQVDAPY 400
VNTRARSWVK VKHEDTDEFL IVGYTAPKGS RVGFGSLLLA TPDKGGLRYV 450
GRVGTGFDDQ SLRALLKALQ PLAVKTPVLQ LPAHVPFRAA SVRWVKPVAV 500
AEVAFRGWGK EGLLRQASFK RLRSDKQKED LGMSTADTET GGEVEITHPE 550
RVVFPRQKLR KGDVADYYQR MARWILPEIA GRPLSLLRCP DGVGKACFFQ 600
KHHGPGLGDA VHAVPLQQKS GREDYVYVDD ARGLLQLVQM NTLELHPWGA 650
TVADPEHPDR LVFDLDPGEG VSWAQVKAAA RDVRDRLQEV GLQSFVRLSG 700
GKGVHVVVPL QPKAGWDEAK AFCEAFAQAM ALEQPDRYVA TMSKAKRGGV 750
IFIDWLRNTR GATSVCSWSL RARDAAGVAV PLRWEELARV SAADAFPMAK 800
ALARAKRLKG DPWQGIARLK QRLPSLKR 828
Length:828
Mass (Da):91,328
Last modified:June 10, 2008 - v1
Checksum:iB66DCFCC2D0686C7
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AM743169 Genomic DNA. Translation: CAQ43668.1.
RefSeqiYP_001969984.1. NC_010943.1.

Genome annotation databases

EnsemblBacteriaiCAQ43668; CAQ43668; Smlt0053.
GeneIDi6391857.
KEGGisml:Smlt0053.
PATRICi23695853. VBISteMal45202_0046.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AM743169 Genomic DNA. Translation: CAQ43668.1 .
RefSeqi YP_001969984.1. NC_010943.1.

3D structure databases

ProteinModelPortali B2FU16.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 522373.Smlt0053.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAQ43668 ; CAQ43668 ; Smlt0053 .
GeneIDi 6391857.
KEGGi sml:Smlt0053.
PATRICi 23695853. VBISteMal45202_0046.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi DWTIRSI.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci SMAL522373:GJE8-50-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants."
    Crossman L.C., Gould V.C., Dow J.M., Vernikos G.S., Okazaki A., Sebaihia M., Saunders D., Arrowsmith C., Carver T., Peters N., Adlem E., Kerhornou A., Lord A., Murphy L., Seeger K., Squares R., Rutter S., Quail M.A.
    , Rajandream M.A., Harris D., Churcher C., Bentley S.D., Parkhill J., Thomson N.R., Avison M.B.
    Genome Biol. 9:R74.1-R74.13(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K279aImported.

Entry informationi

Entry nameiB2FU16_STRMK
AccessioniPrimary (citable) accession number: B2FU16
Entry historyi
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: May 14, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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