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B2FU16

- B2FU16_STRMK

UniProt

B2FU16 - B2FU16_STRMK

Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

Smlt0053

Organism
Stenotrophomonas maltophilia (strain K279a)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (10 Jun 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSMAL522373:GJE8-50-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative ATP-dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Smlt0053Imported
    OrganismiStenotrophomonas maltophilia (strain K279a)Imported
    Taxonomic identifieri522373 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
    ProteomesiUP000008840: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi522373.Smlt0053.

    Structurei

    3D structure databases

    ProteinModelPortaliB2FU16.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiDWTIRSI.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B2FU16-1 [UniParc]FASTAAdd to Basket

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    MSLHQYRRKR RLGGGAGQTT EPDDTPAPGD PKQRPTFVIQ LHHASSRHYD    50
    FRLEMDGVLK SWAVPKGPSL RVGEKRLAVE VEDHPLSYAG FEGDIPEGHY 100
    GAGHVEVFDH GTWACEGDPL QALAAGKIDF VLHGQRLAGG WKLVRTAMKG 150
    RQVQWLLIKR GDGEARDAEA DDLLTAPMPK RTPAAKKRSA DKTARAAPVA 200
    RTTTRKADVR WHARALQLHG ARDAPYPHAF KPQLTDHRDS APDGDRWLHE 250
    IKWDGYRLLA DLHDGEVKLR SRNGLDWTDD FPEVVQAVQA LPVRDARLDG 300
    ELVVLDKEGR SDFAALQRVI DGSSKQPLRY IVFDLPGVAG ADISRAPLLE 350
    RKALLKELIG PAPGTLAFSE HVIDHGPQVF DASGKAGFEG TVSKQVDAPY 400
    VNTRARSWVK VKHEDTDEFL IVGYTAPKGS RVGFGSLLLA TPDKGGLRYV 450
    GRVGTGFDDQ SLRALLKALQ PLAVKTPVLQ LPAHVPFRAA SVRWVKPVAV 500
    AEVAFRGWGK EGLLRQASFK RLRSDKQKED LGMSTADTET GGEVEITHPE 550
    RVVFPRQKLR KGDVADYYQR MARWILPEIA GRPLSLLRCP DGVGKACFFQ 600
    KHHGPGLGDA VHAVPLQQKS GREDYVYVDD ARGLLQLVQM NTLELHPWGA 650
    TVADPEHPDR LVFDLDPGEG VSWAQVKAAA RDVRDRLQEV GLQSFVRLSG 700
    GKGVHVVVPL QPKAGWDEAK AFCEAFAQAM ALEQPDRYVA TMSKAKRGGV 750
    IFIDWLRNTR GATSVCSWSL RARDAAGVAV PLRWEELARV SAADAFPMAK 800
    ALARAKRLKG DPWQGIARLK QRLPSLKR 828
    Length:828
    Mass (Da):91,328
    Last modified:June 10, 2008 - v1
    Checksum:iB66DCFCC2D0686C7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM743169 Genomic DNA. Translation: CAQ43668.1.
    RefSeqiYP_001969984.1. NC_010943.1.

    Genome annotation databases

    EnsemblBacteriaiCAQ43668; CAQ43668; Smlt0053.
    GeneIDi6391857.
    KEGGisml:Smlt0053.
    PATRICi23695853. VBISteMal45202_0046.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM743169 Genomic DNA. Translation: CAQ43668.1 .
    RefSeqi YP_001969984.1. NC_010943.1.

    3D structure databases

    ProteinModelPortali B2FU16.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 522373.Smlt0053.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAQ43668 ; CAQ43668 ; Smlt0053 .
    GeneIDi 6391857.
    KEGGi sml:Smlt0053.
    PATRICi 23695853. VBISteMal45202_0046.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi DWTIRSI.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci SMAL522373:GJE8-50-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants."
      Crossman L.C., Gould V.C., Dow J.M., Vernikos G.S., Okazaki A., Sebaihia M., Saunders D., Arrowsmith C., Carver T., Peters N., Adlem E., Kerhornou A., Lord A., Murphy L., Seeger K., Squares R., Rutter S., Quail M.A.
      , Rajandream M.A., Harris D., Churcher C., Bentley S.D., Parkhill J., Thomson N.R., Avison M.B.
      Genome Biol. 9:R74.1-R74.13(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K279aImported.

    Entry informationi

    Entry nameiB2FU16_STRMK
    AccessioniPrimary (citable) accession number: B2FU16
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 10, 2008
    Last sequence update: June 10, 2008
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3