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B2FU16

- B2FU16_STRMK

UniProt

B2FU16 - B2FU16_STRMK

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Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

Smlt0053

Organism
Stenotrophomonas maltophilia (strain K279a)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSMAL522373:GJE8-50-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Smlt0053Imported
OrganismiStenotrophomonas maltophilia (strain K279a)Imported
Taxonomic identifieri522373 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
ProteomesiUP000008840: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi522373.Smlt0053.

Structurei

3D structure databases

ProteinModelPortaliB2FU16.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2FU16-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSLHQYRRKR RLGGGAGQTT EPDDTPAPGD PKQRPTFVIQ LHHASSRHYD
60 70 80 90 100
FRLEMDGVLK SWAVPKGPSL RVGEKRLAVE VEDHPLSYAG FEGDIPEGHY
110 120 130 140 150
GAGHVEVFDH GTWACEGDPL QALAAGKIDF VLHGQRLAGG WKLVRTAMKG
160 170 180 190 200
RQVQWLLIKR GDGEARDAEA DDLLTAPMPK RTPAAKKRSA DKTARAAPVA
210 220 230 240 250
RTTTRKADVR WHARALQLHG ARDAPYPHAF KPQLTDHRDS APDGDRWLHE
260 270 280 290 300
IKWDGYRLLA DLHDGEVKLR SRNGLDWTDD FPEVVQAVQA LPVRDARLDG
310 320 330 340 350
ELVVLDKEGR SDFAALQRVI DGSSKQPLRY IVFDLPGVAG ADISRAPLLE
360 370 380 390 400
RKALLKELIG PAPGTLAFSE HVIDHGPQVF DASGKAGFEG TVSKQVDAPY
410 420 430 440 450
VNTRARSWVK VKHEDTDEFL IVGYTAPKGS RVGFGSLLLA TPDKGGLRYV
460 470 480 490 500
GRVGTGFDDQ SLRALLKALQ PLAVKTPVLQ LPAHVPFRAA SVRWVKPVAV
510 520 530 540 550
AEVAFRGWGK EGLLRQASFK RLRSDKQKED LGMSTADTET GGEVEITHPE
560 570 580 590 600
RVVFPRQKLR KGDVADYYQR MARWILPEIA GRPLSLLRCP DGVGKACFFQ
610 620 630 640 650
KHHGPGLGDA VHAVPLQQKS GREDYVYVDD ARGLLQLVQM NTLELHPWGA
660 670 680 690 700
TVADPEHPDR LVFDLDPGEG VSWAQVKAAA RDVRDRLQEV GLQSFVRLSG
710 720 730 740 750
GKGVHVVVPL QPKAGWDEAK AFCEAFAQAM ALEQPDRYVA TMSKAKRGGV
760 770 780 790 800
IFIDWLRNTR GATSVCSWSL RARDAAGVAV PLRWEELARV SAADAFPMAK
810 820
ALARAKRLKG DPWQGIARLK QRLPSLKR
Length:828
Mass (Da):91,328
Last modified:June 10, 2008 - v1
Checksum:iB66DCFCC2D0686C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM743169 Genomic DNA. Translation: CAQ43668.1.
RefSeqiYP_001969984.1. NC_010943.1.

Genome annotation databases

EnsemblBacteriaiCAQ43668; CAQ43668; Smlt0053.
GeneIDi6391857.
KEGGisml:Smlt0053.
PATRICi23695853. VBISteMal45202_0046.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM743169 Genomic DNA. Translation: CAQ43668.1 .
RefSeqi YP_001969984.1. NC_010943.1.

3D structure databases

ProteinModelPortali B2FU16.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 522373.Smlt0053.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAQ43668 ; CAQ43668 ; Smlt0053 .
GeneIDi 6391857.
KEGGi sml:Smlt0053.
PATRICi 23695853. VBISteMal45202_0046.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi DWTIRSI.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci SMAL522373:GJE8-50-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants."
    Crossman L.C., Gould V.C., Dow J.M., Vernikos G.S., Okazaki A., Sebaihia M., Saunders D., Arrowsmith C., Carver T., Peters N., Adlem E., Kerhornou A., Lord A., Murphy L., Seeger K., Squares R., Rutter S., Quail M.A.
    , Rajandream M.A., Harris D., Churcher C., Bentley S.D., Parkhill J., Thomson N.R., Avison M.B.
    Genome Biol. 9:R74.1-R74.13(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K279aImported.

Entry informationi

Entry nameiB2FU16_STRMK
AccessioniPrimary (citable) accession number: B2FU16
Entry historyi
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: October 1, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3