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B2FSA7

- B2FSA7_STRMK

UniProt

B2FSA7 - B2FSA7_STRMK

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Protein
Submitted name:

Putative DNA ligase family protein

Gene

Smlt2530

Organism
Stenotrophomonas maltophilia (strain K279a)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSMAL522373:GJE8-2452-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative DNA ligase family proteinImported
Gene namesi
Ordered Locus Names:Smlt2530Imported
OrganismiStenotrophomonas maltophilia (strain K279a)Imported
Taxonomic identifieri522373 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
ProteomesiUP000008840: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi522373.Smlt2530.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDISNESM.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2FSA7-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MSLVEYRRKR RFDQTREPEP GKALPEGQRA IFVVQLHHAS RRHYDFRLQV
60 70 80 90 100
GDALKSWAVP KGPSYDPKVK RMAVEVEDHP VDYAAFEGEI PKGQYGGGHV
110 120 130 140 150
AQFDHGVWAT QGDPEAQLAK GHLRFELFGA KLKGGWHLVR SGKPARQPQW
160 170 180 190 200
LLFKDDDEFA SDIEADDLLA DVAVAPPEDL KRAGAGKTAK KKLTVVSPTR
210 220 230 240 250
TRRKNWAKKA LALGKARRAA APSGPFEPQL AKLGDAPPQG GQWVHEIKWD
260 270 280 290 300
GYRILATVAE GNVQLWSRNA LEWTGKLPEI RDAIAALGLT SAALDGELIA
310 320 330 340 350
GAGTKEDFNL LQATLSGERQ GVLTYALFDL LHLDGVDIAD APLLERKALL
360 370 380 390 400
HSVLEGQGRP LAFSSHVQGD GDEAYRLAGE QHFEGIISKR ADRSYHSGRS
410 420 430 440 450
EDWRKTKQLA SDEFAVVGYT APKGSRTGFG SLLLARPDPK HGWLYVGRVG
460 470 480 490 500
SGFSDELIGE VSRRIEGGGG RKPTAHVPTQ DTDLRAATWF APRFVVEVFY
510 520 530 540 550
RGIGGQKLLR QASLKAVRAD KDIADLEDSD RAGKAPAAGG THAPSRPGRR
560 570 580 590 600
AKKPPATGRT PPALSSPGKI LFPGDGYTKQ EVWDYYAAVM EHLLPEVVDR
610 620 630 640 650
PLSIIRCPSG TAKPCFFQKH HTAGLELVDP VRLKEESGIN AHYLVVRDAA
660 670 680 690 700
SLLELVQFNA LEFHPWGSHA EAPDKADRVV FDLDPGPDVP FAEVKKAATD
710 720 730 740 750
IRKLLAQLQL ESFLRVSGGK GLHVVVPLNP GCDWDLTKRF AKGFADALAQ
760 770 780 790 800
SEPQRFLATA TKSLRNKRIF VDYLRNGRGA TAVASYSLRA RPGAPVALPI
810 820 830 840
AWGDLAKLKR ADAFTIKDVP AKLKRRRKDP WAGIGEVKQN LARWAQADP
Length:849
Mass (Da):93,054
Last modified:June 10, 2008 - v1
Checksum:i6D0B1FCBC7F6848F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM743169 Genomic DNA. Translation: CAQ46010.1.
RefSeqiWP_012480283.1. NC_010943.1.
YP_001972305.1. NC_010943.1.

Genome annotation databases

EnsemblBacteriaiCAQ46010; CAQ46010; Smlt2530.
GeneIDi6393984.
KEGGisml:Smlt2530.
PATRICi23700615. VBISteMal45202_2377.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM743169 Genomic DNA. Translation: CAQ46010.1 .
RefSeqi WP_012480283.1. NC_010943.1.
YP_001972305.1. NC_010943.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 522373.Smlt2530.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAQ46010 ; CAQ46010 ; Smlt2530 .
GeneIDi 6393984.
KEGGi sml:Smlt2530.
PATRICi 23700615. VBISteMal45202_2377.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi DISNESM.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci SMAL522373:GJE8-2452-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants."
    Crossman L.C., Gould V.C., Dow J.M., Vernikos G.S., Okazaki A., Sebaihia M., Saunders D., Arrowsmith C., Carver T., Peters N., Adlem E., Kerhornou A., Lord A., Murphy L., Seeger K., Squares R., Rutter S., Quail M.A.
    , Rajandream M.A., Harris D., Churcher C., Bentley S.D., Parkhill J., Thomson N.R., Avison M.B.
    Genome Biol. 9:R74.1-R74.13(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K279aImported.

Entry informationi

Entry nameiB2FSA7_STRMK
AccessioniPrimary (citable) accession number: B2FSA7
Entry historyi
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: October 1, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3