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B2FSA7 (B2FSA7_STRMK) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative DNA ligase family protein EMBL CAQ46010.1
Gene names
Ordered Locus Names:Smlt2530
OrganismStenotrophomonas maltophilia (strain K279a) [Complete proteome] [HAMAP] EMBL CAQ46010.1
Taxonomic identifier522373 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Stenotrophomonas › Stenotrophomonas maltophilia group ›

Protein attributes

Sequence length849 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CAQ46010.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B2FSA7 [UniParc].

Last modified June 10, 2008. Version 1.
Checksum: 6D0B1FCBC7F6848F

FASTA84993,054
        10         20         30         40         50         60 
MSLVEYRRKR RFDQTREPEP GKALPEGQRA IFVVQLHHAS RRHYDFRLQV GDALKSWAVP 

        70         80         90        100        110        120 
KGPSYDPKVK RMAVEVEDHP VDYAAFEGEI PKGQYGGGHV AQFDHGVWAT QGDPEAQLAK 

       130        140        150        160        170        180 
GHLRFELFGA KLKGGWHLVR SGKPARQPQW LLFKDDDEFA SDIEADDLLA DVAVAPPEDL 

       190        200        210        220        230        240 
KRAGAGKTAK KKLTVVSPTR TRRKNWAKKA LALGKARRAA APSGPFEPQL AKLGDAPPQG 

       250        260        270        280        290        300 
GQWVHEIKWD GYRILATVAE GNVQLWSRNA LEWTGKLPEI RDAIAALGLT SAALDGELIA 

       310        320        330        340        350        360 
GAGTKEDFNL LQATLSGERQ GVLTYALFDL LHLDGVDIAD APLLERKALL HSVLEGQGRP 

       370        380        390        400        410        420 
LAFSSHVQGD GDEAYRLAGE QHFEGIISKR ADRSYHSGRS EDWRKTKQLA SDEFAVVGYT 

       430        440        450        460        470        480 
APKGSRTGFG SLLLARPDPK HGWLYVGRVG SGFSDELIGE VSRRIEGGGG RKPTAHVPTQ 

       490        500        510        520        530        540 
DTDLRAATWF APRFVVEVFY RGIGGQKLLR QASLKAVRAD KDIADLEDSD RAGKAPAAGG 

       550        560        570        580        590        600 
THAPSRPGRR AKKPPATGRT PPALSSPGKI LFPGDGYTKQ EVWDYYAAVM EHLLPEVVDR 

       610        620        630        640        650        660 
PLSIIRCPSG TAKPCFFQKH HTAGLELVDP VRLKEESGIN AHYLVVRDAA SLLELVQFNA 

       670        680        690        700        710        720 
LEFHPWGSHA EAPDKADRVV FDLDPGPDVP FAEVKKAATD IRKLLAQLQL ESFLRVSGGK 

       730        740        750        760        770        780 
GLHVVVPLNP GCDWDLTKRF AKGFADALAQ SEPQRFLATA TKSLRNKRIF VDYLRNGRGA 

       790        800        810        820        830        840 
TAVASYSLRA RPGAPVALPI AWGDLAKLKR ADAFTIKDVP AKLKRRRKDP WAGIGEVKQN 


LARWAQADP

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References

[1]"The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants."
Crossman L.C., Gould V.C., Dow J.M., Vernikos G.S., Okazaki A., Sebaihia M., Saunders D., Arrowsmith C., Carver T., Peters N., Adlem E., Kerhornou A., Lord A., Murphy L., Seeger K., Squares R., Rutter S., Quail M.A. expand/collapse author list , Rajandream M.A., Harris D., Churcher C., Bentley S.D., Parkhill J., Thomson N.R., Avison M.B.
Genome Biol. 9:R74.1-R74.13(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K279a.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AM743169 Genomic DNA. Translation: CAQ46010.1.
RefSeqYP_001972305.1. NC_010943.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING522373.Smlt2530.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAQ46010; CAQ46010; Smlt2530.
GeneID6393984.
KEGGsml:Smlt2530.
PATRIC23700615. VBISteMal45202_2377.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMAWHLVRSG.
ProtClustDBCLSK299585.

Enzyme and pathway databases

BioCycSMAL522373:GJE8-2452-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB2FSA7_STRMK
AccessionPrimary (citable) accession number: B2FSA7
Entry history
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: May 1, 2013
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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