Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

B2FSA7

- B2FSA7_STRMK

UniProt

B2FSA7 - B2FSA7_STRMK

Protein
Submitted name:

Putative DNA ligase family protein

Gene

Smlt2530

Organism
Stenotrophomonas maltophilia (strain K279a)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 38 (01 Oct 2014)
      Sequence version 1 (10 Jun 2008)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSMAL522373:GJE8-2452-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative DNA ligase family proteinImported
    Gene namesi
    Ordered Locus Names:Smlt2530Imported
    OrganismiStenotrophomonas maltophilia (strain K279a)Imported
    Taxonomic identifieri522373 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
    ProteomesiUP000008840: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi522373.Smlt2530.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiDISNESM.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B2FSA7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSLVEYRRKR RFDQTREPEP GKALPEGQRA IFVVQLHHAS RRHYDFRLQV    50
    GDALKSWAVP KGPSYDPKVK RMAVEVEDHP VDYAAFEGEI PKGQYGGGHV 100
    AQFDHGVWAT QGDPEAQLAK GHLRFELFGA KLKGGWHLVR SGKPARQPQW 150
    LLFKDDDEFA SDIEADDLLA DVAVAPPEDL KRAGAGKTAK KKLTVVSPTR 200
    TRRKNWAKKA LALGKARRAA APSGPFEPQL AKLGDAPPQG GQWVHEIKWD 250
    GYRILATVAE GNVQLWSRNA LEWTGKLPEI RDAIAALGLT SAALDGELIA 300
    GAGTKEDFNL LQATLSGERQ GVLTYALFDL LHLDGVDIAD APLLERKALL 350
    HSVLEGQGRP LAFSSHVQGD GDEAYRLAGE QHFEGIISKR ADRSYHSGRS 400
    EDWRKTKQLA SDEFAVVGYT APKGSRTGFG SLLLARPDPK HGWLYVGRVG 450
    SGFSDELIGE VSRRIEGGGG RKPTAHVPTQ DTDLRAATWF APRFVVEVFY 500
    RGIGGQKLLR QASLKAVRAD KDIADLEDSD RAGKAPAAGG THAPSRPGRR 550
    AKKPPATGRT PPALSSPGKI LFPGDGYTKQ EVWDYYAAVM EHLLPEVVDR 600
    PLSIIRCPSG TAKPCFFQKH HTAGLELVDP VRLKEESGIN AHYLVVRDAA 650
    SLLELVQFNA LEFHPWGSHA EAPDKADRVV FDLDPGPDVP FAEVKKAATD 700
    IRKLLAQLQL ESFLRVSGGK GLHVVVPLNP GCDWDLTKRF AKGFADALAQ 750
    SEPQRFLATA TKSLRNKRIF VDYLRNGRGA TAVASYSLRA RPGAPVALPI 800
    AWGDLAKLKR ADAFTIKDVP AKLKRRRKDP WAGIGEVKQN LARWAQADP 849
    Length:849
    Mass (Da):93,054
    Last modified:June 10, 2008 - v1
    Checksum:i6D0B1FCBC7F6848F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM743169 Genomic DNA. Translation: CAQ46010.1.
    RefSeqiWP_012480283.1. NC_010943.1.
    YP_001972305.1. NC_010943.1.

    Genome annotation databases

    EnsemblBacteriaiCAQ46010; CAQ46010; Smlt2530.
    GeneIDi6393984.
    KEGGisml:Smlt2530.
    PATRICi23700615. VBISteMal45202_2377.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM743169 Genomic DNA. Translation: CAQ46010.1 .
    RefSeqi WP_012480283.1. NC_010943.1.
    YP_001972305.1. NC_010943.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 522373.Smlt2530.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAQ46010 ; CAQ46010 ; Smlt2530 .
    GeneIDi 6393984.
    KEGGi sml:Smlt2530.
    PATRICi 23700615. VBISteMal45202_2377.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi DISNESM.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci SMAL522373:GJE8-2452-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants."
      Crossman L.C., Gould V.C., Dow J.M., Vernikos G.S., Okazaki A., Sebaihia M., Saunders D., Arrowsmith C., Carver T., Peters N., Adlem E., Kerhornou A., Lord A., Murphy L., Seeger K., Squares R., Rutter S., Quail M.A.
      , Rajandream M.A., Harris D., Churcher C., Bentley S.D., Parkhill J., Thomson N.R., Avison M.B.
      Genome Biol. 9:R74.1-R74.13(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K279aImported.

    Entry informationi

    Entry nameiB2FSA7_STRMK
    AccessioniPrimary (citable) accession number: B2FSA7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 10, 2008
    Last sequence update: June 10, 2008
    Last modified: October 1, 2014
    This is version 38 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3