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B2FQ31 (B2FQ31_STRMK) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118
Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tufB EMBL CAQ44461.1
Synonyms:tuf HAMAP-Rule MF_00118 EMBL CAQ44473.1
Ordered Locus Names:Smlt0890, Smlt0904
OrganismStenotrophomonas maltophilia (strain K279a) [Complete proteome] [HAMAP] EMBL CAQ44461.1
Taxonomic identifier522373 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Stenotrophomonas › Stenotrophomonas maltophilia group ›

Protein attributes

Sequence length396 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
B2FQ31 [UniParc].

Last modified June 10, 2008. Version 1.
Checksum: 59550305D4492C37

FASTA39642,961
        10         20         30         40         50         60 
MAKGKFERTK PHVNVGTIGH VDHGKTTLTA ALTKIGAERF GGEFKDYSSI DAAPEEKARG 

        70         80         90        100        110        120 
ITISTAHVEY ESPVRHYAHV DCPGHADYVK NMITGAAQMD GAILVCSAAD GPMPQTREHI 

       130        140        150        160        170        180 
LLSRQVGVPY IVVFLNKADM VDDAELLELV EMEVRELLSK YDFPGDDTPI IAGSARLALE 

       190        200        210        220        230        240 
GDQSDIGVPA ILKLVDALDS WIPEPERAID KPFLMPVEDV FSISGRGTVV TGRIERGVIK 

       250        260        270        280        290        300 
VGDEIEIVGI RPVQKTTVTG VEMFRKLLDQ GQAGDNAGLL LRGTKRDDVE RGQVLAKPGS 

       310        320        330        340        350        360 
IKPHTKFEGE VYVLSKDEGG RHTPFFNGYR PQFYFRTTDI TGAAALPEGV EMVMPGDNVK 

       370        380        390 
MVVTLINPVA MDEGLRFAIR EGGRTVGAGV VSKIIE

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References

[1]"The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants."
Crossman L.C., Gould V.C., Dow J.M., Vernikos G.S., Okazaki A., Sebaihia M., Saunders D., Arrowsmith C., Carver T., Peters N., Adlem E., Kerhornou A., Lord A., Murphy L., Seeger K., Squares R., Rutter S., Quail M.A. expand/collapse author list , Rajandream M.A., Harris D., Churcher C., Bentley S.D., Parkhill J., Thomson N.R., Avison M.B.
Genome Biol. 9:R74.1-R74.13(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K279a.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AM743169 Genomic DNA. Translation: CAQ44461.1.
AM743169 Genomic DNA. Translation: CAQ44473.1.
RefSeqYP_001970775.1. NC_010943.1.
YP_001970787.1. NC_010943.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING522373.Smlt0904.

Proteomic databases

PRIDEB2FQ31.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAQ44461; CAQ44461; Smlt0890.
CAQ44473; CAQ44473; Smlt0904.
GeneID6392550.
6394454.
KEGGsml:Smlt0890.
sml:Smlt0904.
PATRIC23697509. VBISteMal45202_0859.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0050.
HOGENOMHOG000229290.
KOK02358.
OMACEFVGYN.
ProtClustDBPRK00049.

Enzyme and pathway databases

BioCycSMAL522373:GJE8-861-MONOMER.
SMAL522373:GJE8-874-MONOMER.

Family and domain databases

HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR005225. Small_GTP-bd_dom.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
IPR009000. Transl_elong_init/rib_B-barrel.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50465. Elong_init_C. 1 hit.
SSF50447. Translat_factor. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB2FQ31_STRMK
AccessionPrimary (citable) accession number: B2FQ31
Entry history
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: May 1, 2013
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info