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B2FPW1

- B2FPW1_STRMK

UniProt

B2FPW1 - B2FPW1_STRMK

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Protein
Submitted name:

Putative ATP-DEPENDENT DNA LIGASE LIGB (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [ATP]) (POLYNUCLEOTIDE LIGASE [ATP]) (SEALASE) (DNA REPAIR PROTEIN) (DNA JOINASE)

Gene

ligB

Organism
Stenotrophomonas maltophilia (strain K279a)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSMAL522373:GJE8-3417-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-DEPENDENT DNA LIGASE LIGB (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [ATP]) (POLYNUCLEOTIDE LIGASE [ATP]) (SEALASE) (DNA REPAIR PROTEIN) (DNA JOINASE)Imported (EC:6.5.1.1Imported)
Gene namesi
Name:ligBImported
Ordered Locus Names:Smlt3530Imported
OrganismiStenotrophomonas maltophilia (strain K279a)Imported
Taxonomic identifieri522373 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
ProteomesiUP000008840: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi522373.Smlt3530.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiELRIWIA.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2FPW1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKAFAALYQR LDRSTATLDK RAALVDYFRH AAAHDAAWAL YLLSGGKVGG
60 70 80 90 100
ARRRIAASGE LRIWIAEESG LPAWLVEDSY AQVGDLAETL TLLLDDPLHP
110 120 130 140 150
AADRPLSDWI EQHLLAVANQ PEVVRRAAVV AGWRQLCSGE RLVFNKLLTG
160 170 180 190 200
ALRVGVSQRL VQQALAEWSG LDIARIAQRM LGEWVPSPAL LGQLLSPDEL
210 220 230 240 250
PLDRQQPYPF FLASPLEGEP GERLGPVEDW LLEWKWDGIR LQLLRRRGEV
260 270 280 290 300
ALWSRGEERL DGRFPEIEQA AMALPDGCVL DGELLAWDES DDLPRAFTAL
310 320 330 340 350
QTRIQRRKPG AATLRNTPVR VLAYDLLERD GEDLRGLPLR QRRAQLAEVI
360 370 380 390 400
GALGDTRIQL SPDVPAGDWL QAATLREAAR ERGVEGLMLK RRTSAYQSGR
410 420 430 440 450
RRGDWWKWKV DPLTIDAVLL YAQAGHGRRS TLYTDYTFGV WDGDTLVPVA
460 470 480 490 500
KAYSGLDDKE ILALDRWIRA NTRERFGPVR SVRAEQVFEL GFEAVNRSSR
510 520 530
HKSGIAVRFP RILRWRHDKP AAESDQLATL QALAR
Length:535
Mass (Da):60,099
Last modified:June 10, 2008 - v1
Checksum:i2A5D6270EE543ABF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM743169 Genomic DNA. Translation: CAQ46952.1.
RefSeqiWP_012480963.1. NC_010943.1.
YP_001973241.1. NC_010943.1.

Genome annotation databases

EnsemblBacteriaiCAQ46952; CAQ46952; Smlt3530.
GeneIDi6392761.
KEGGisml:Smlt3530.
PATRICi23702523. VBISteMal45202_3314.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM743169 Genomic DNA. Translation: CAQ46952.1 .
RefSeqi WP_012480963.1. NC_010943.1.
YP_001973241.1. NC_010943.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 522373.Smlt3530.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAQ46952 ; CAQ46952 ; Smlt3530 .
GeneIDi 6392761.
KEGGi sml:Smlt3530.
PATRICi 23702523. VBISteMal45202_3314.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi ELRIWIA.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci SMAL522373:GJE8-3417-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants."
    Crossman L.C., Gould V.C., Dow J.M., Vernikos G.S., Okazaki A., Sebaihia M., Saunders D., Arrowsmith C., Carver T., Peters N., Adlem E., Kerhornou A., Lord A., Murphy L., Seeger K., Squares R., Rutter S., Quail M.A.
    , Rajandream M.A., Harris D., Churcher C., Bentley S.D., Parkhill J., Thomson N.R., Avison M.B.
    Genome Biol. 9:R74.1-R74.13(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K279aImported.

Entry informationi

Entry nameiB2FPW1_STRMK
AccessioniPrimary (citable) accession number: B2FPW1
Entry historyi
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: October 29, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3