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B2FPW1 (B2FPW1_STRMK) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL CAQ46952.1
Gene names
Name:ligB EMBL CAQ46952.1
Ordered Locus Names:Smlt3530 EMBL CAQ46952.1
OrganismStenotrophomonas maltophilia (strain K279a) [Complete proteome] [HAMAP] EMBL CAQ46952.1
Taxonomic identifier522373 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group

Protein attributes

Sequence length535 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CAQ46952.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B2FPW1 [UniParc].

Last modified June 10, 2008. Version 1.
Checksum: 2A5D6270EE543ABF

FASTA53560,099
        10         20         30         40         50         60 
MKAFAALYQR LDRSTATLDK RAALVDYFRH AAAHDAAWAL YLLSGGKVGG ARRRIAASGE 

        70         80         90        100        110        120 
LRIWIAEESG LPAWLVEDSY AQVGDLAETL TLLLDDPLHP AADRPLSDWI EQHLLAVANQ 

       130        140        150        160        170        180 
PEVVRRAAVV AGWRQLCSGE RLVFNKLLTG ALRVGVSQRL VQQALAEWSG LDIARIAQRM 

       190        200        210        220        230        240 
LGEWVPSPAL LGQLLSPDEL PLDRQQPYPF FLASPLEGEP GERLGPVEDW LLEWKWDGIR 

       250        260        270        280        290        300 
LQLLRRRGEV ALWSRGEERL DGRFPEIEQA AMALPDGCVL DGELLAWDES DDLPRAFTAL 

       310        320        330        340        350        360 
QTRIQRRKPG AATLRNTPVR VLAYDLLERD GEDLRGLPLR QRRAQLAEVI GALGDTRIQL 

       370        380        390        400        410        420 
SPDVPAGDWL QAATLREAAR ERGVEGLMLK RRTSAYQSGR RRGDWWKWKV DPLTIDAVLL 

       430        440        450        460        470        480 
YAQAGHGRRS TLYTDYTFGV WDGDTLVPVA KAYSGLDDKE ILALDRWIRA NTRERFGPVR 

       490        500        510        520        530 
SVRAEQVFEL GFEAVNRSSR HKSGIAVRFP RILRWRHDKP AAESDQLATL QALAR 

« Hide

References

[1]"The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants."
Crossman L.C., Gould V.C., Dow J.M., Vernikos G.S., Okazaki A., Sebaihia M., Saunders D., Arrowsmith C., Carver T., Peters N., Adlem E., Kerhornou A., Lord A., Murphy L., Seeger K., Squares R., Rutter S., Quail M.A. expand/collapse author list , Rajandream M.A., Harris D., Churcher C., Bentley S.D., Parkhill J., Thomson N.R., Avison M.B.
Genome Biol. 9:R74.1-R74.13(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K279a EMBL CAQ46952.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM743169 Genomic DNA. Translation: CAQ46952.1.
RefSeqYP_001973241.1. NC_010943.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING522373.Smlt3530.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAQ46952; CAQ46952; Smlt3530.
GeneID6392761.
KEGGsml:Smlt3530.
PATRIC23702523. VBISteMal45202_3314.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036007.
KOK01971.
OMAGQPYPFF.
OrthoDBEOG6Q8HXT.
ProtClustDBPRK09247.

Enzyme and pathway databases

BioCycSMAL522373:GJE8-3417-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB2FPW1_STRMK
AccessionPrimary (citable) accession number: B2FPW1
Entry history
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: April 16, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)