Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

B2FPW1

- B2FPW1_STRMK

UniProt

B2FPW1 - B2FPW1_STRMK

Protein
Submitted name:

Putative ATP-DEPENDENT DNA LIGASE LIGB (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [ATP]) (POLYNUCLEOTIDE LIGASE [ATP]) (SEALASE) (DNA REPAIR PROTEIN) (DNA JOINASE)

Gene

ligB

Organism
Stenotrophomonas maltophilia (strain K279a)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 42 (01 Oct 2014)
      Sequence version 1 (10 Jun 2008)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSMAL522373:GJE8-3417-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative ATP-DEPENDENT DNA LIGASE LIGB (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [ATP]) (POLYNUCLEOTIDE LIGASE [ATP]) (SEALASE) (DNA REPAIR PROTEIN) (DNA JOINASE)Imported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligBImported
    Ordered Locus Names:Smlt3530Imported
    OrganismiStenotrophomonas maltophilia (strain K279a)Imported
    Taxonomic identifieri522373 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
    ProteomesiUP000008840: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi522373.Smlt3530.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiELRIWIA.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B2FPW1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKAFAALYQR LDRSTATLDK RAALVDYFRH AAAHDAAWAL YLLSGGKVGG    50
    ARRRIAASGE LRIWIAEESG LPAWLVEDSY AQVGDLAETL TLLLDDPLHP 100
    AADRPLSDWI EQHLLAVANQ PEVVRRAAVV AGWRQLCSGE RLVFNKLLTG 150
    ALRVGVSQRL VQQALAEWSG LDIARIAQRM LGEWVPSPAL LGQLLSPDEL 200
    PLDRQQPYPF FLASPLEGEP GERLGPVEDW LLEWKWDGIR LQLLRRRGEV 250
    ALWSRGEERL DGRFPEIEQA AMALPDGCVL DGELLAWDES DDLPRAFTAL 300
    QTRIQRRKPG AATLRNTPVR VLAYDLLERD GEDLRGLPLR QRRAQLAEVI 350
    GALGDTRIQL SPDVPAGDWL QAATLREAAR ERGVEGLMLK RRTSAYQSGR 400
    RRGDWWKWKV DPLTIDAVLL YAQAGHGRRS TLYTDYTFGV WDGDTLVPVA 450
    KAYSGLDDKE ILALDRWIRA NTRERFGPVR SVRAEQVFEL GFEAVNRSSR 500
    HKSGIAVRFP RILRWRHDKP AAESDQLATL QALAR 535
    Length:535
    Mass (Da):60,099
    Last modified:June 10, 2008 - v1
    Checksum:i2A5D6270EE543ABF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM743169 Genomic DNA. Translation: CAQ46952.1.
    RefSeqiYP_001973241.1. NC_010943.1.

    Genome annotation databases

    EnsemblBacteriaiCAQ46952; CAQ46952; Smlt3530.
    GeneIDi6392761.
    KEGGisml:Smlt3530.
    PATRICi23702523. VBISteMal45202_3314.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM743169 Genomic DNA. Translation: CAQ46952.1 .
    RefSeqi YP_001973241.1. NC_010943.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 522373.Smlt3530.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAQ46952 ; CAQ46952 ; Smlt3530 .
    GeneIDi 6392761.
    KEGGi sml:Smlt3530.
    PATRICi 23702523. VBISteMal45202_3314.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi ELRIWIA.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci SMAL522373:GJE8-3417-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants."
      Crossman L.C., Gould V.C., Dow J.M., Vernikos G.S., Okazaki A., Sebaihia M., Saunders D., Arrowsmith C., Carver T., Peters N., Adlem E., Kerhornou A., Lord A., Murphy L., Seeger K., Squares R., Rutter S., Quail M.A.
      , Rajandream M.A., Harris D., Churcher C., Bentley S.D., Parkhill J., Thomson N.R., Avison M.B.
      Genome Biol. 9:R74.1-R74.13(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K279aImported.

    Entry informationi

    Entry nameiB2FPW1_STRMK
    AccessioniPrimary (citable) accession number: B2FPW1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 10, 2008
    Last sequence update: June 10, 2008
    Last modified: October 1, 2014
    This is version 42 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3