B2DYI4 (B2DYI4_STRPN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Peptide deformylase HAMAP MF_00163
Short name=PDF HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163

Alternative name(s):
Polypeptide deformylase HAMAP MF_00163

Gene names

Name:	def1 EMBL EDT97259.1
Synonyms:	def HAMAP MF_00163
ORF Names:	SP305906_1393 EMBL EDT97259.1

Organism

Streptococcus pneumoniae CDC3059-06 EMBL EDT97259.1

Taxonomic identifier

453365 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Lactobacillales › Streptococcaceae › Streptococcus

Protein attributes

Sequence length	203 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163
Catalytic activity	Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181
Cofactor	Binds 1 Fe2+ ion By similarity. HAMAP MF_00163
Sequence similarities	Belongs to the polypeptide deformylase family. HAMAP MF_00163 RuleBase RU003335

Ontologies

Keywords
Biological process	Protein biosynthesis HAMAP MF_00163 SAAS SAAS000181
Ligand	Iron HAMAP MF_00163 Metal-binding HAMAP MF_00163 SAAS SAAS000181
Molecular function	Hydrolase HAMAP MF_00163 SAAS SAAS000181 EMBL EDT97259.1
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Molecular function	iron ion binding Inferred from electronic annotation. Source: InterPro peptide deformylase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	174	1	By similarity HAMAP MF_00163
	Metal binding	130	1	Iron By similarity HAMAP MF_00163
	Metal binding	173	1	Iron By similarity HAMAP MF_00163
	Metal binding	177	1	Iron By similarity HAMAP MF_00163

Sequences

	Sequence		Length	Mass (Da)
	B2DYI4 [UniParc]. Last modified June 10, 2008. Version 1. Checksum: E332956982A67161	FASTA	203	22,692
	10 20 30 40 50 60 MSAIERITKA AHLIDMNDII REGNPTLRTV AEEVTFPLSD QEIILGEKMM QFLKHSQDPV 70 80 90 100 110 120 MAEKMGLRGG VGLAAPQLDI SKRIIAVLVP NIVEEGETPQ EAYDLEAIMY NPKIVSHSVQ 130 140 150 160 170 180 DAALGEGEGC LSVDRNVPGY VVRHARVTVD YFDKDGEKHR IKLKGYNSIV VQHEIDHING 190 200 IMFYDRINEK DPFAVKDGLL ILE

References

[1]

"Genome Sequence of Streptococcus pneumoniae CDC3059-06." Dunning Hotopp J., Dodson R., Masignani V., Coan P., Kumar N., Covacci A., Beall B., Rappuoli R., Hollingshead S., Tettelin H. Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: CDC3059-06 EMBL EDT97259.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	ABGG01000002 Genomic DNA. Translation: EDT97259.1.
3D structure databases
ProteinModelPortal	B2DYI4.
SMR	B2DYI4. Positions 2-203.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
PATRIC	28632669. VBIStrPne114647_0746.
Family and domain databases
HAMAP	MF_00163. Pep_deformylase. [Tree]
InterPro	IPR000181. Fmet_deformylase. IPR023635. Peptide_deformylase. [Graphical view]
Gene3D	G3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
PANTHER	PTHR10458. Fmet_deformylase. 1 hit.
Pfam	PF01327. Pep_deformylase. 1 hit. [Graphical view]
PIRSF	PIRSF004749. Pep_def. 1 hit.
PRINTS	PR01576. PDEFORMYLASE.
SUPFAM	SSF56420. Fmet_deformylase. 1 hit.
TIGRFAMs	TIGR00079. Pept_deformyl. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B2DYI4_STRPN

Accession

Primary (citable) accession number: B2DYI4

Entry history

Integrated into UniProtKB/TrEMBL:	June 10, 2008
Last sequence update:	June 10, 2008
Last modified:	December 14, 2011
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)