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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Oter_4308

Organism
Opitutus terrae (strain DSM 11246 / PB90-1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciOTER452637:GHBR-4376-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Oter_4308Imported
OrganismiOpitutus terrae (strain DSM 11246 / PB90-1)Imported
Taxonomic identifieri452637 [NCBI]
Taxonomic lineageiBacteriaVerrucomicrobiaOpitutaeOpitutalesOpitutaceaeOpitutus
ProteomesiUP000007013 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi452637.Oter_4308.

Structurei

3D structure databases

ProteinModelPortaliB1ZP91.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000244654.
KOiK01971.
OMAiKIFIDWS.
OrthoDBiEOG6FV833.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol_dom.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

B1ZP91-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATKTELVVA GTRLMVSNLD KVMYPKTGFT KGNVIDYYVR VADVLLPHLK
60 70 80 90 100
NRPITLKRYP DGVAGFFFYE KQCPPHRPKW VKTATVPRGK REGEIHYCVM
110 120 130 140 150
NDLPALVWAA NLADLELHTF LHKAPAIGRP TAIAFDLDPG PPADIVLCCQ
160 170 180 190 200
VGLWVKAVFD RLGLKSFAKT SGSKGLQIYV PLNTPVTYDR TKAFAHTLAQ
210 220 230 240 250
ALERQFPDVV VSKMLKSLRT GKVLVDWSQN DDHKTTVNVY SLRAKDQPTV
260 270 280 290 300
STPVTWEEVE AAWKKQKADL LVFESEDVVK RIAKHGDLFA PVLQLKQKLP

PIGELA
Length:306
Mass (Da):34,228
Last modified:May 20, 2008 - v1
Checksum:i9978AC48F1C19508
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001032 Genomic DNA. Translation: ACB77580.1.
RefSeqiWP_012377106.1. NC_010571.1.

Genome annotation databases

EnsemblBacteriaiACB77580; ACB77580; Oter_4308.
KEGGiote:Oter_4308.
PATRICi22820447. VBIOpiTer17422_4481.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001032 Genomic DNA. Translation: ACB77580.1.
RefSeqiWP_012377106.1. NC_010571.1.

3D structure databases

ProteinModelPortaliB1ZP91.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi452637.Oter_4308.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACB77580; ACB77580; Oter_4308.
KEGGiote:Oter_4308.
PATRICi22820447. VBIOpiTer17422_4481.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000244654.
KOiK01971.
OMAiKIFIDWS.
OrthoDBiEOG6FV833.

Enzyme and pathway databases

BioCyciOTER452637:GHBR-4376-MONOMER.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol_dom.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 11246 / PB90-1Imported.

Entry informationi

Entry nameiB1ZP91_OPITP
AccessioniPrimary (citable) accession number: B1ZP91
Entry historyi
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: July 22, 2015
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.