B1ZNM4 (B1ZNM4_OPITP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glycoside hydrolase family 28 EMBL ACB74458.1

Gene names

Ordered Locus Names:

Oter_1170

Organism

Opitutus terrae (strain DSM 11246 / PB90-1) [Complete proteome] [HAMAP]

Taxonomic identifier

452637 [NCBI]

Taxonomic lineage

Bacteria › Verrucomicrobia › Opitutae › Opitutales › Opitutaceae › Opitutus

Protein attributes

Sequence length	548 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Hydrolase EMBL ACB74458.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	polygalacturonase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1ZNM4 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: 00C5D43FF8C858C6	FASTA	548	57,786
	10 20 30 40 50 60 MSSTEFNVRD FGAQGDGVTL DSPAINAAIA AAAAAGGGTV RLPAGTYLSY SIRLRSQLTL 70 80 90 100 110 120 HLDAGATLLA ATPSAGAGGY DAPEPNDWGD VRQYQDFGHS HWHNSLIWGE GLENIAITGT 130 140 150 160 170 180 GRIDGRGLVK NLAYGGGPRD CGPDGTVDEG ARPPIVFAPD PIPAGAPEPA PDPRLADPHA 190 200 210 220 230 240 TDGYANKAIG LKLCRNVTLR DFSLLNGGHF ALLATGVDNL TIDGLRVDTN RDGLDIDTCR 250 260 270 280 290 300 NVRIINCSVN APNDDAIVLK SSYALGEARP CENVTIVNCF VSGFDIGSLL DGSFRRTLRH 310 320 330 340 350 360 APDLDGPTGR IKLGTESSGG FRNIAIVNCV FERSRGLALE TVDGGVIEDV VVSNLAMREI 370 380 390 400 410 420 ANAPIFLRLG ARARGPKGTP VGAIRRVQIS QVSVSGADGR FPILLAGLPD HPIEDVVLDG 430 440 450 460 470 480 VQVQSRGGIT LEQVRAQPAE LVNSFFLRGD EPGVTGPREP LAVPLRAKSY PEPSMFGLLP 490 500 510 520 530 540 ASALYARDVK NLTVRDVSYG FAREDARPRV VLERVSLSAF DGFRAAAPTQ GEAVVLRDVS GWPARPST

References

[1]

"Complete sequence of Opitutus terrae PB90-1." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Pitluck S., Goltsman E., Clum A., Sun H., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Smidt H., Richardson P. Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 11246 / PB90-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001032 Genomic DNA. Translation: ACB74458.1.
RefSeq	YP_001818058.1. NC_010571.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B1ZNM4.
Protein family/group databases
CAZy	GH28. Glycoside Hydrolase Family 28.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6206829.
GenomeReviews	Gene locus Oter_1170 in contig CP001032_GR.
KEGG	ote:Oter_1170.
PATRIC	22813837. VBIOpiTer17422_1215.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG293348.
OMA	FAREDAR.
ProtClustDB	CLSK807189.
Family and domain databases
InterPro	IPR000743. Glyco_hydro_28. IPR006626. PbH1. IPR012334. Pectin_lyas_fold. IPR011050. Pectin_lyase_fold/virulence. [Graphical view]
Gene3D	G3DSA:2.160.20.10. Pectin_lyas_fold. 3 hits.
Pfam	PF00295. Glyco_hydro_28. 1 hit. [Graphical view]
SMART	SM00710. PbH1. 4 hits. [Graphical view]
SUPFAM	SSF51126. Pectin_lyas_like. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B1ZNM4_OPITP

Accession

Primary (citable) accession number: B1ZNM4

Entry history

Integrated into UniProtKB/TrEMBL:	May 20, 2008
Last sequence update:	May 20, 2008
Last modified:	December 14, 2011
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)