B1ZIR0 (B1ZIR0_METPB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA topoisomerase IV, B subunit EMBL ACB81467.1
EC=5.99.1.3 EMBL ACB81467.1

Gene names

Ordered Locus Names:

Mpop_3316

Organism

Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) [Complete proteome] [HAMAP]

Taxonomic identifier

441620 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Methylobacteriaceae › Methylobacterium

Protein attributes

Sequence length	647 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type II topoisomerase family. RuleBase RU000380

Ontologies

Keywords
Ligand	ATP-binding RuleBase RU000380 SAAS SAAS002288 Nucleotide-binding
Molecular function	Isomerase Topoisomerase SAAS SAAS002288 RuleBase RU000380
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1ZIR0 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: D01B49AE97B1A800	FASTA	647	70,783
	10 20 30 40 50 60 MAEAGYDASA IEVLEGLEPV RRRPGMYIGG TDERALHHLF AEVIDNSMDE AVAGHASFIE 70 80 90 100 110 120 VELEETGALV VTDNGRGIPV DPHPKFPGKS ALEVIMTTLH AGGKFDSKVY ETSGGLHGVG 130 140 150 160 170 180 ISVVNALSDV LEVEVARNQT LYRQTFSRGH AQGPLETLGR VQNRRGTRVR FHPDAQIFGS 190 200 210 220 230 240 LKFDPRRLFK MARSKAYLFG GVEIRWRCAP ALLEGLEDVP AEAVHRFPGG LSDYLARDIE 250 260 270 280 290 300 GKELVLDAIF SGKVTKPGSH GSLEWAVAWT VADDGVSHSY CNTIPTPEGG THESGLRVAL 310 320 330 340 350 360 LRALREHAER VNQAKRMTSV TTDDVLATCA SMLSVFIREP EFQGQTKDKL ATVEASRIVE 370 380 390 400 410 420 TAVRDAFDHW LAASPAQANK LLDWVIDRAE ERLRRRQEKE VARKSATRKL RLPGKLADCS 430 440 450 460 470 480 AAGTAGSEIF IVEGDSAGGS AKQARDRATQ AVLPLRGKIL NVASASRDKL GANQLISDLT 490 500 510 520 530 540 LALGCGTGAN FREGDLRYDR VIIMTDADVD GAHIASLLIT FFYRQMPKLI DKGHLYLAIP 550 560 570 580 590 600 PLYRISQGAK SAYARDDADK ERIIKTVFKN GKVEIGRFKG LGEMMPAQLK ETTMDPKKRT 610 620 630 640 LLRVAVLDEA RESTGDTVER LMGNKPEARF AFITERAAFA DGTELDI

References

[1]

"Complete sequence of chromosome of Methylobacterium populi BJ001." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Mikhailova N., Marx C., Richardson P. Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-705 / NCIMB 13946 / BJ001.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001029 Genomic DNA. Translation: ACB81467.1.
RefSeq	YP_001926002.1. NC_010725.1.
3D structure databases
ProteinModelPortal	B1ZIR0.
ModBase	Search...
Protein-protein interaction databases
STRING	B1ZIR0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6311194.
GenomeReviews	Gene locus Mpop_3316 in contig CP001029_GR.
KEGG	mpo:Mpop_3316.
PATRIC	22563930. VBIMetPop124700_3371.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG304889.
OMA	QARDKEF.
ProtClustDB	PRK05559.
Family and domain databases
InterPro	IPR003594. ATPase-like_ATP-bd. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR001241. Topo_IIA. IPR013759. Topo_IIA_B/N_ab. IPR002288. Topo_IIA_B_C. IPR013506. Topo_IIA_bsu_dom2. IPR013760. Topo_IIA_cen. IPR018522. TopoIIA_CS. IPR005737. TopoIV_B_Gneg. IPR006171. Toprim_domain. [Graphical view]
Gene3D	G3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit. G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KO	K02622.
Pfam	PF00204. DNA_gyraseB. 1 hit. PF00986. DNA_gyraseB_C. 1 hit. PF02518. HATPase_c. 1 hit. PF01751. Toprim. 1 hit. [Graphical view]
PRINTS	PR00418. TPI2FAMILY.
SMART	SM00387. HATPase_c. 1 hit. SM00433. TOP2c. 1 hit. [Graphical view]
SUPFAM	SSF55874. ATP_bd_ATPase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMs	TIGR01055. ParE_Gneg. 1 hit.
PROSITE	PS00177. TOPOISOMERASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1ZIR0_METPB

Accession

Primary (citable) accession number: B1ZIR0

Entry history

Integrated into UniProtKB/TrEMBL:	May 20, 2008
Last sequence update:	May 20, 2008
Last modified:	January 25, 2012
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)