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B1ZGB0

- B1ZGB0_METPB

UniProt

B1ZGB0 - B1ZGB0_METPB

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Protein
Phenylalanine--tRNA ligase beta subunit
Gene
pheT, Mpop_1604
Organism
Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
Status
Unreviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe).UniRule annotationSAAS annotations

Cofactori

Binds 2 magnesium ions per tetramer By similarity.UniRule annotationSAAS annotations

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi456 – 4561Magnesium By similarityUniRule annotation
Metal bindingi462 – 4621Magnesium; via carbonyl oxygen By similarityUniRule annotation
Metal bindingi465 – 4651Magnesium By similarityUniRule annotation
Metal bindingi466 – 4661Magnesium By similarityUniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-HAMAP
  2. magnesium ion binding Source: UniProtKB-HAMAP
  3. phenylalanine-tRNA ligase activity Source: UniProtKB-HAMAP
  4. tRNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. phenylalanyl-tRNA aminoacylation Source: UniProtKB-HAMAP
  2. tRNA processing Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Aminoacyl-tRNA synthetaseUniRule annotationSAAS annotationsImported, Ligase

Keywords - Biological processi

Protein biosynthesisUniRule annotationSAAS annotations

Keywords - Ligandi

ATP-bindingUniRule annotationSAAS annotations, MagnesiumUniRule annotationSAAS annotations, Metal-bindingUniRule annotationSAAS annotations, Nucleotide-binding, RNA-binding, tRNA-bindingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciMPOP441620:GHMI-1646-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Phenylalanine--tRNA ligase beta subunitUniRule annotation (EC:6.1.1.20UniRule annotation)
Alternative name(s):
Phenylalanyl-tRNA synthetase beta subunit
Gene namesi
Name:pheTUniRule annotation
Ordered Locus Names:Mpop_1604Imported
OrganismiMethylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)Imported
Taxonomic identifieri441620 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesMethylobacteriaceaeMethylobacterium
ProteomesiUP000007136: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotationSAAS annotations

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotations

Interactioni

Subunit structurei

Tetramer of two alpha and two beta subunits By similarity.UniRule annotationSAAS annotations

Protein-protein interaction databases

STRINGi441620.Mpop_1604.

Structurei

3D structure databases

ProteinModelPortaliB1ZGB0.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini39 – 149111tRNA-binding By similarityUniRule annotation
Add
BLAST
Domaini403 – 47876B5 By similarityUniRule annotation
Add
BLAST
Domaini713 – 80694FDX-ACB By similarityUniRule annotation
Add
BLAST

Sequence similaritiesi

Contains 1 B5 domain.UniRule annotation
Contains 1 FDX-ACB domain.UniRule annotation
Contains 1 tRNA-binding domain.UniRule annotation
Contains B5 domain.SAAS annotations
Contains Bdomain.SAAS annotations
Contains FDX-ACB domain.SAAS annotations
Contains tRNA-binding domain.SAAS annotations

Phylogenomic databases

eggNOGiCOG0072.
HOGENOMiHOG000292085.
KOiK01890.
OMAiNYVMIEL.
OrthoDBiEOG6CCH1J.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
3.30.56.20. 1 hit.
3.30.70.380. 1 hit.
3.50.40.10. 1 hit.
HAMAPiMF_00283. Phe_tRNA_synth_beta1.
InterProiIPR005146. B3/B4_tRNA-bd.
IPR009061. DNA-bd_dom_put.
IPR012340. NA-bd_OB-fold.
IPR004532. Phe-tRNA-ligase_IIc_bsu.
IPR020825. Phe-tRNA_synthase_B3/B4.
IPR005121. PheS_beta_Fdx_antiC-bd.
IPR002547. tRNA-bd_dom.
IPR005147. tRNA_synthase_B5-dom.
[Graphical view]
PfamiPF03483. B3_4. 1 hit.
PF03484. B5. 1 hit.
PF03147. FDX-ACB. 1 hit.
PF01588. tRNA_bind. 1 hit.
[Graphical view]
SMARTiSM00873. B3_4. 1 hit.
SM00874. B5. 1 hit.
SM00896. FDX-ACB. 1 hit.
[Graphical view]
SUPFAMiSSF46955. SSF46955. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF54991. SSF54991. 1 hit.
SSF56037. SSF56037. 1 hit.
TIGRFAMsiTIGR00472. pheT_bact. 1 hit.
PROSITEiPS51483. B5. 1 hit.
PS51447. FDX_ACB. 1 hit.
PS50886. TRBD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1ZGB0-1 [UniParc]FASTAAdd to Basket

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MKFTLSWLKD HLDTEASLDA ISETLTRIGL EVEGIEDKAA ALRPYVIARV    50
ISAEQHPNAD RLRVCQVDPG DGQPLQVVCG APNARTGMLS VFAPPGTYVP 100
GKAITLSVGT IRGVESRGML CSGAELGLSE DHDGILDLPA DAPVGTPYAV 150
WAGLDDPVIE INLTPNRSDC ASIHGIARDL AATGIGTLKR EPMPPVRGEG 200
ACPTPVTLQF DAHDKGLCPL FALRLVRGVK NGPSPEWMQK RLRAIGLRPI 250
NALVDITNYL TFDRGRPLHV FDAKKVAGGL TVRRAEDGES LVALDGKTYR 300
LDSDTVVIAD DKGVESIGGI MGGEASGCDE TTTDVLIESA LWDPRNIART 350
GRRLGIITDA RYRFERGVDP AFALPGLDLA TRLVIDLCGG SPSQATIAGE 400
VPELSHVIDF PWTEVRRLAG IELSRAEMKV TLESLGFHIS GSGDRVKVLP 450
PSWRPDVEGK ADLVEEIVRI AGLDRIEPKP LPRIETVAVE PMLTVLQRRG 500
RLAKRALASR GMLEAVTYSF IPHADARLFG GGKPDLALAN PIAADLSDMR 550
PSLVPGLLRA AQANADRGFP DTALFEVGQC FASDEPEGQS LRATGLRRGT 600
ARHSGAGRHW SGAAEVVDAF EAKADALALL AALGVPTGGL QIVAGGPDWL 650
HPGRSGTLQF GPKNVVGHFG ELHPRLLKAM DLKGTLVAFE ITLDALPLPR 700
HRPTKAKPAL ALSDLQAISR DFAFVVPRDV PAADILKAAQ GAERKMITGI 750
EVFDLYEGTG IPEGAKSVAV AVRLQPSERT LTDAEIEAVS AKIVAEVGKK 800
TGATLRS 807
Length:807
Mass (Da):85,916
Last modified:May 20, 2008 - v1
Checksum:i418AC8A705EB4640
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001029 Genomic DNA. Translation: ACB79768.1.
RefSeqiYP_001924303.1. NC_010725.1.

Genome annotation databases

EnsemblBacteriaiACB79768; ACB79768; Mpop_1604.
GeneIDi6312478.
KEGGimpo:Mpop_1604.
PATRICi22560441. VBIMetPop124700_1639.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001029 Genomic DNA. Translation: ACB79768.1 .
RefSeqi YP_001924303.1. NC_010725.1.

3D structure databases

ProteinModelPortali B1ZGB0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 441620.Mpop_1604.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACB79768 ; ACB79768 ; Mpop_1604 .
GeneIDi 6312478.
KEGGi mpo:Mpop_1604.
PATRICi 22560441. VBIMetPop124700_1639.

Phylogenomic databases

eggNOGi COG0072.
HOGENOMi HOG000292085.
KOi K01890.
OMAi NYVMIEL.
OrthoDBi EOG6CCH1J.

Enzyme and pathway databases

BioCyci MPOP441620:GHMI-1646-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
3.30.56.20. 1 hit.
3.30.70.380. 1 hit.
3.50.40.10. 1 hit.
HAMAPi MF_00283. Phe_tRNA_synth_beta1.
InterProi IPR005146. B3/B4_tRNA-bd.
IPR009061. DNA-bd_dom_put.
IPR012340. NA-bd_OB-fold.
IPR004532. Phe-tRNA-ligase_IIc_bsu.
IPR020825. Phe-tRNA_synthase_B3/B4.
IPR005121. PheS_beta_Fdx_antiC-bd.
IPR002547. tRNA-bd_dom.
IPR005147. tRNA_synthase_B5-dom.
[Graphical view ]
Pfami PF03483. B3_4. 1 hit.
PF03484. B5. 1 hit.
PF03147. FDX-ACB. 1 hit.
PF01588. tRNA_bind. 1 hit.
[Graphical view ]
SMARTi SM00873. B3_4. 1 hit.
SM00874. B5. 1 hit.
SM00896. FDX-ACB. 1 hit.
[Graphical view ]
SUPFAMi SSF46955. SSF46955. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF54991. SSF54991. 1 hit.
SSF56037. SSF56037. 1 hit.
TIGRFAMsi TIGR00472. pheT_bact. 1 hit.
PROSITEi PS51483. B5. 1 hit.
PS51447. FDX_ACB. 1 hit.
PS50886. TRBD. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome of Methylobacterium populi BJ001."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L.
    , Kyrpides N., Mikhailova N., Marx C., Richardson P.
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-705 / NCIMB 13946 / BJ001.

Entry informationi

Entry nameiB1ZGB0_METPB
AccessioniPrimary (citable) accession number: B1ZGB0
Entry historyi
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: June 11, 2014
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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