B1ZFQ8 (RS6_METPB) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
30S ribosomal protein S6

Gene names

Name:	rpsF
Ordered Locus Names:	Mpop_4417

Organism

Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) [Complete proteome] [HAMAP]

Taxonomic identifier

441620 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Methylobacteriaceae › Methylobacterium

Protein attributes

Sequence length	151 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds together with S18 to 16S ribosomal RNA By similarity. HAMAP MF_00360
Sequence similarities	Belongs to the ribosomal protein S6P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: UniProtKB-KW structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 151	151	30S ribosomal protein S6 HAMAP MF_00360		PRO_1000120772

Sequences

	Sequence		Length	Mass (Da)
	B1ZFQ8 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: 7E29E7967BA68026	FASTA	151	17,370
	10 20 30 40 50 60 MPLYEHVFLA RQDVTAQQVE TMVETYKGVI ETGGGTIEKI ESWGVKSLAY RIKKNRKAHF 70 80 90 100 110 120 TLLNISAPPA ALAEMERQMQ ISEDVLRFMT VRVEQLEAEP SAMMQKRDRD DRKDRDRGDR 130 140 150 PRRRDDDFGG GDRGDRGDRG DRPERNFGGE N

References

[1]

"Complete sequence of chromosome of Methylobacterium populi BJ001." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Mikhailova N., Marx C., Richardson P. Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-705 / NCIMB 13946 / BJ001.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001029 Genomic DNA. Translation: ACB82517.1.
RefSeq	YP_001927052.1. NC_010725.1.
3D structure databases
ProteinModelPortal	B1ZFQ8.
ModBase	Search...
Protein-protein interaction databases
STRING	B1ZFQ8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6310060.
GenomeReviews	Gene locus Mpop_4417 in contig CP001029_GR.
KEGG	mpo:Mpop_4417.
PATRIC	22566066. VBIMetPop124700_4430.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG747554.
OMA	ITEASPM.
ProtClustDB	PRK00453.
Family and domain databases
HAMAP	MF_00360. Ribosomal_S6. [Tree]
InterPro	IPR000529. Ribosomal_S6. IPR020814. Ribosomal_S6_plastid/chlpt. IPR014717. Transl_elong_EF1B/ribosomal_S6. [Graphical view]
Gene3D	G3DSA:3.30.70.60. Transl_elong_EF1B/rib_con. 1 hit.
KO	K02990.
Pfam	PF01250. Ribosomal_S6. 1 hit. [Graphical view]
SUPFAM	SSF54995. Ribosomal_S6. 1 hit.
TIGRFAMs	TIGR00166. S6. 1 hit.
PROSITE	PS01048. RIBOSOMAL_S6. False negative. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RS6_METPB

Accession

Primary (citable) accession number: B1ZFQ8

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 14, 2009
Last sequence update:	May 20, 2008
Last modified:	January 25, 2012
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program