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Protein
Submitted name:

Type III secretion outer membrane pore, YscC/HrcC family

Gene

BamMC406_5654

Organism
Burkholderia ambifaria (strain MC40-6)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Type III secretion outer membrane pore, YscC/HrcC familyImported
Gene namesi
Ordered Locus Names:BamMC406_5654Imported
OrganismiBurkholderia ambifaria (strain MC40-6)Imported
Taxonomic identifieri398577 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
Proteomesi
  • UP000001680 Componenti: Chromosome 3

Subcellular locationi

  • Cell outer membrane UniRule annotation

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 27Sequence analysisAdd BLAST27
ChainiPRO_500277436828 – 589Sequence analysisAdd BLAST562

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini180 – 341Secretin_NInterPro annotationAdd BLAST162

Sequence similaritiesi

Belongs to the GSP D family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

HOGENOMiHOG000214462.
KOiK03219.
OMAiYLMARIS.
OrthoDBiPOG091H00DF.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.

Sequencei

Sequence statusi: Complete.

B1Z5Q1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNWARRLGTV ALAAALAFGA TAPVAEAAAV RWKASIVDYE AQGKDIKDVL
60 70 80 90 100
RDFGASQGIP TRIAADVSGT VSGKFHLPPR RFLDTLASSF GFVWYYDGEV
110 120 130 140 150
LDITTAAELQ STLVKLDSAD TGALRDALDR LRISDERFPI VYDSAQGTAL
160 170 180 190 200
VSGPPRYVQM VTNVASRLDN NAAHRSGTQV RVFPLFHAWA HDRTVPIDGR
210 220 230 240 250
QVTLQGVVAV LNGIYHPHMA KAADKRGEGE GGRAAGGVKR NTPINDVNGN
260 270 280 290 300
AYNGPYIPPP VPSGAAGKGM FAGLTGQPSP AVAAAVGEPP PPQNTSTAPA
310 320 330 340 350
SDDQLPVIVA DQRTNSVVIR DTADRMDQYG KLIDRLDVKP QLIEIEAHII
360 370 380 390 400
EIDDDALRQL GVDWTAHNSH IDVQTGTGTL GQNTYNGTLS QNFGQTALAG
410 420 430 440 450
NVLAAATPVG ASVAAVLGDA GRYLMARISA LQETKAAKID ASPKVVTLNN
460 470 480 490 500
IEAVMDNQTQ FFVPVSGYTS GDLYSVSTGI SLRVLPMVVE EDGRTRIKLD
510 520 530 540 550
VAIQDGQLTD RTVSNLPVIQ NSTINTQAFI EEGQALLIAG YRADTATMGV
560 570 580
TGVPGLSKIP LIGALFRTDS RQKSHMERLF LLSPRVISP
Length:589
Mass (Da):62,615
Last modified:May 20, 2008 - v1
Checksum:iB3D47D9DACF21F5D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001027 Genomic DNA. Translation: ACB68097.1.
RefSeqiWP_012372033.1. NC_010557.1.

Genome annotation databases

EnsemblBacteriaiACB68097; ACB68097; BamMC406_5654.
KEGGibac:BamMC406_5654.
PATRICi19041651. VBIBurAmb82852_6106.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001027 Genomic DNA. Translation: ACB68097.1.
RefSeqiWP_012372033.1. NC_010557.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACB68097; ACB68097; BamMC406_5654.
KEGGibac:BamMC406_5654.
PATRICi19041651. VBIBurAmb82852_6106.

Phylogenomic databases

HOGENOMiHOG000214462.
KOiK03219.
OMAiYLMARIS.
OrthoDBiPOG091H00DF.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiB1Z5Q1_BURA4
AccessioniPrimary (citable) accession number: B1Z5Q1
Entry historyi
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: November 2, 2016
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.