Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

B1Z4V9 (B1Z4V9_BURA4) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:BamMC406_6340 EMBL ACB68772.1
OrganismBurkholderia ambifaria (strain MC40-6) [Complete proteome] [HAMAP] EMBL ACB68772.1
Taxonomic identifier398577 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex

Protein attributes

Sequence length949 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
B1Z4V9 [UniParc].

Last modified May 20, 2008. Version 1.
Checksum: 290C4B1A9B99DE95

FASTA949104,991
        10         20         30         40         50         60 
MAGKLDPYRR KRHFGATPEP EGAHGRRTQA AAKAAARTRA RGAHPLRFVI QEHHARRLHY 

        70         80         90        100        110        120 
DFRLELDGTL KSWAVPKGPS FDPSVKRLAV HVEDHPLEYA SFEGQIPEGH YGAGSVVVWD 

       130        140        150        160        170        180 
EGTWTPDGGL AQAREGYRAG KLTFRLDGEK LHGGWALVRS GRQQGRQEQW LLIKERDDDA 

       190        200        210        220        230        240 
RSMDEFDVVG ERPGSVHDGA ASARADAKNG SARARGSRQG RSEKPATRAA RHDDRAHDGH 

       250        260        270        280        290        300 
AGAPVDPSRI EGAVRAPLPE HVAPQLATLV DGPPTQGDWC YELKFDGYRI LARISGKGAR 

       310        320        330        340        350        360 
RHVKLMTREG RDWTAKLRAQ RDALAALDVD AAWLDGEAVV LGKNGLPDFQ ALQNAFGGGH 

       370        380        390        400        410        420 
SDEITLFVFD LPYLDGYDLR DAPLTARRAL LEPLLADSDP TRLRFSPDLG DDVASLIASA 

       430        440        450        460        470        480 
CDTGLEGLIG KRAESRYRAG RSPAWIKLKC RRRQEFVIGG YTEPSGSRHG FGALLLGVHE 

       490        500        510        520        530        540 
PAADGKRRRG PGPLRYVGRV GTGFDTRMLD RLTPILRKHE RDKMPFDPPP RERSRTPVHW 

       550        560        570        580        590        600 
IEPVLVAECE FAEWTGDGIV RQAAFIALRD DKPAARIVRE VPKHTETEVQ MDQRETAQHE 

       610        620        630        640        650        660 
RHKPGRTAHA GRDTGDTSDT SDTSDTSDTS DTSDGKHPAR SRGSRRAEAD DTGPDQLGRV 

       670        680        690        700        710        720 
RISHPERVID SHSGTRKIDL ARYWQWVAPW LLPDLKGRPV SLVRAPGDIS GELFFQKHAE 

       730        740        750        760        770        780 
RREIPFVTQH DGLDPGHGPL LSLDSVDALL GAAQMGTIEL HTWNAHASNI ERPDRIVFDL 

       790        800        810        820        830        840 
DPDPALPWSA MIDAAQLVRG LLDELGLISF CKTSGGKGLH VVVPITRHMG WDEVKDFSRA 

       850        860        870        880        890        900 
VAQHVAGALP DRFTATMGPK HRRGKIFIDY LRNGRGASTI AAYSVRARPG LGVSVPLRWD 

       910        920        930        940 
EVPDTTGGAQ WTIDTLHERL DRLKRDPWDG YDDTRQRITA QMRARLGTS 

« Hide

References

[1]"Complete sequence of chromosome 3 of Burkholderia ambifaria MC40-6."
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A. expand/collapse author list , Ramette A., Konstantinidis K., Tiedje J., Richardson P.
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MC40-6.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001027 Genomic DNA. Translation: ACB68772.1.
RefSeqYP_001816325.1. NC_010557.1.

3D structure databases

ProteinModelPortalB1Z4V9.
SMRB1Z4V9. Positions 659-946.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING398577.BamMC406_6340.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACB68772; ACB68772; BamMC406_6340.
GeneID6182644.
KEGGbac:BamMC406_6340.
PATRIC19043083. VBIBurAmb82852_6818.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMAHPLDYAD.
OrthoDBEOG661H49.
ProtClustDBCLSK954720.

Enzyme and pathway databases

BioCycBAMB398577:GH38-6428-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB1Z4V9_BURA4
AccessionPrimary (citable) accession number: B1Z4V9
Entry history
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: April 16, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)