B1Z4V9 (B1Z4V9_BURA4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL ACB68772.1

Gene names

Ordered Locus Names:

BamMC406_6340 EMBL ACB68772.1

Organism

Burkholderia ambifaria (strain MC40-6) [Complete proteome] [HAMAP] EMBL ACB68772.1

Taxonomic identifier

398577 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › Burkholderia cepacia complex › Burkholderia ambifaria

Protein attributes

Sequence length	949 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACB68772.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1Z4V9 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: 290C4B1A9B99DE95	FASTA	949	104,991
	10 20 30 40 50 60 MAGKLDPYRR KRHFGATPEP EGAHGRRTQA AAKAAARTRA RGAHPLRFVI QEHHARRLHY 70 80 90 100 110 120 DFRLELDGTL KSWAVPKGPS FDPSVKRLAV HVEDHPLEYA SFEGQIPEGH YGAGSVVVWD 130 140 150 160 170 180 EGTWTPDGGL AQAREGYRAG KLTFRLDGEK LHGGWALVRS GRQQGRQEQW LLIKERDDDA 190 200 210 220 230 240 RSMDEFDVVG ERPGSVHDGA ASARADAKNG SARARGSRQG RSEKPATRAA RHDDRAHDGH 250 260 270 280 290 300 AGAPVDPSRI EGAVRAPLPE HVAPQLATLV DGPPTQGDWC YELKFDGYRI LARISGKGAR 310 320 330 340 350 360 RHVKLMTREG RDWTAKLRAQ RDALAALDVD AAWLDGEAVV LGKNGLPDFQ ALQNAFGGGH 370 380 390 400 410 420 SDEITLFVFD LPYLDGYDLR DAPLTARRAL LEPLLADSDP TRLRFSPDLG DDVASLIASA 430 440 450 460 470 480 CDTGLEGLIG KRAESRYRAG RSPAWIKLKC RRRQEFVIGG YTEPSGSRHG FGALLLGVHE 490 500 510 520 530 540 PAADGKRRRG PGPLRYVGRV GTGFDTRMLD RLTPILRKHE RDKMPFDPPP RERSRTPVHW 550 560 570 580 590 600 IEPVLVAECE FAEWTGDGIV RQAAFIALRD DKPAARIVRE VPKHTETEVQ MDQRETAQHE 610 620 630 640 650 660 RHKPGRTAHA GRDTGDTSDT SDTSDTSDTS DTSDGKHPAR SRGSRRAEAD DTGPDQLGRV 670 680 690 700 710 720 RISHPERVID SHSGTRKIDL ARYWQWVAPW LLPDLKGRPV SLVRAPGDIS GELFFQKHAE 730 740 750 760 770 780 RREIPFVTQH DGLDPGHGPL LSLDSVDALL GAAQMGTIEL HTWNAHASNI ERPDRIVFDL 790 800 810 820 830 840 DPDPALPWSA MIDAAQLVRG LLDELGLISF CKTSGGKGLH VVVPITRHMG WDEVKDFSRA 850 860 870 880 890 900 VAQHVAGALP DRFTATMGPK HRRGKIFIDY LRNGRGASTI AAYSVRARPG LGVSVPLRWD 910 920 930 940 EVPDTTGGAQ WTIDTLHERL DRLKRDPWDG YDDTRQRITA QMRARLGTS

References

[1]

"Complete sequence of chromosome 3 of Burkholderia ambifaria MC40-6." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A. , Ramette A., Konstantinidis K., Tiedje J., Richardson P. Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: MC40-6.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001027 Genomic DNA. Translation: ACB68772.1.
RefSeq	YP_001816325.1. NC_010557.1.
3D structure databases
ProteinModelPortal	B1Z4V9.
SMR	B1Z4V9. Positions 659-946.
ModBase	Search...
Protein-protein interaction databases
STRING	398577.BamMC406_6340.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACB68772; ACB68772; BamMC406_6340.
GeneID	6182644.
KEGG	bac:BamMC406_6340.
PATRIC	19043083. VBIBurAmb82852_6818.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	LVAECEF.
ProtClustDB	CLSK954720.
Enzyme and pathway databases
BioCyc	BAMB398577:GH38-813-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1Z4V9_BURA4

Accession

Primary (citable) accession number: B1Z4V9

Entry history

Integrated into UniProtKB/TrEMBL:	May 20, 2008
Last sequence update:	May 20, 2008
Last modified:	May 1, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)