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B1Z4V9

- B1Z4V9_BURA4

UniProt

B1Z4V9 - B1Z4V9_BURA4

Protein
Submitted name:

DNA ligase D

Gene

BamMC406_6340

Organism
Burkholderia ambifaria (strain MC40-6)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (20 May 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBAMB398577:GH38-6428-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:BamMC406_6340Imported
    OrganismiBurkholderia ambifaria (strain MC40-6)Imported
    Taxonomic identifieri398577 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
    ProteomesiUP000001680: Chromosome 3

    Interactioni

    Protein-protein interaction databases

    STRINGi398577.BamMC406_6340.

    Structurei

    3D structure databases

    ProteinModelPortaliB1Z4V9.
    SMRiB1Z4V9. Positions 659-946.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B1Z4V9-1 [UniParc]FASTAAdd to Basket

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    MAGKLDPYRR KRHFGATPEP EGAHGRRTQA AAKAAARTRA RGAHPLRFVI    50
    QEHHARRLHY DFRLELDGTL KSWAVPKGPS FDPSVKRLAV HVEDHPLEYA 100
    SFEGQIPEGH YGAGSVVVWD EGTWTPDGGL AQAREGYRAG KLTFRLDGEK 150
    LHGGWALVRS GRQQGRQEQW LLIKERDDDA RSMDEFDVVG ERPGSVHDGA 200
    ASARADAKNG SARARGSRQG RSEKPATRAA RHDDRAHDGH AGAPVDPSRI 250
    EGAVRAPLPE HVAPQLATLV DGPPTQGDWC YELKFDGYRI LARISGKGAR 300
    RHVKLMTREG RDWTAKLRAQ RDALAALDVD AAWLDGEAVV LGKNGLPDFQ 350
    ALQNAFGGGH SDEITLFVFD LPYLDGYDLR DAPLTARRAL LEPLLADSDP 400
    TRLRFSPDLG DDVASLIASA CDTGLEGLIG KRAESRYRAG RSPAWIKLKC 450
    RRRQEFVIGG YTEPSGSRHG FGALLLGVHE PAADGKRRRG PGPLRYVGRV 500
    GTGFDTRMLD RLTPILRKHE RDKMPFDPPP RERSRTPVHW IEPVLVAECE 550
    FAEWTGDGIV RQAAFIALRD DKPAARIVRE VPKHTETEVQ MDQRETAQHE 600
    RHKPGRTAHA GRDTGDTSDT SDTSDTSDTS DTSDGKHPAR SRGSRRAEAD 650
    DTGPDQLGRV RISHPERVID SHSGTRKIDL ARYWQWVAPW LLPDLKGRPV 700
    SLVRAPGDIS GELFFQKHAE RREIPFVTQH DGLDPGHGPL LSLDSVDALL 750
    GAAQMGTIEL HTWNAHASNI ERPDRIVFDL DPDPALPWSA MIDAAQLVRG 800
    LLDELGLISF CKTSGGKGLH VVVPITRHMG WDEVKDFSRA VAQHVAGALP 850
    DRFTATMGPK HRRGKIFIDY LRNGRGASTI AAYSVRARPG LGVSVPLRWD 900
    EVPDTTGGAQ WTIDTLHERL DRLKRDPWDG YDDTRQRITA QMRARLGTS 949
    Length:949
    Mass (Da):104,991
    Last modified:May 20, 2008 - v1
    Checksum:i290C4B1A9B99DE95
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001027 Genomic DNA. Translation: ACB68772.1.
    RefSeqiYP_001816325.1. NC_010557.1.

    Genome annotation databases

    EnsemblBacteriaiACB68772; ACB68772; BamMC406_6340.
    GeneIDi6182644.
    KEGGibac:BamMC406_6340.
    PATRICi19043083. VBIBurAmb82852_6818.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001027 Genomic DNA. Translation: ACB68772.1 .
    RefSeqi YP_001816325.1. NC_010557.1.

    3D structure databases

    ProteinModelPortali B1Z4V9.
    SMRi B1Z4V9. Positions 659-946.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 398577.BamMC406_6340.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACB68772 ; ACB68772 ; BamMC406_6340 .
    GeneIDi 6182644.
    KEGGi bac:BamMC406_6340.
    PATRICi 19043083. VBIBurAmb82852_6818.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci BAMB398577:GH38-6428-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome 3 of Burkholderia ambifaria MC40-6."
      Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A.
      , Ramette A., Konstantinidis K., Tiedje J., Richardson P.
      Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: MC40-6Imported.

    Entry informationi

    Entry nameiB1Z4V9_BURA4
    AccessioniPrimary (citable) accession number: B1Z4V9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 20, 2008
    Last sequence update: May 20, 2008
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3