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Protein
Submitted name:

DNA ligase D

Gene

BamMC406_6340

Organism
Burkholderia ambifaria (strain MC40-6)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBAMB398577:GH38-6428-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:BamMC406_6340Imported
OrganismiBurkholderia ambifaria (strain MC40-6)Imported
Taxonomic identifieri398577 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
ProteomesiUP000001680 Componenti: Chromosome 3

Interactioni

Protein-protein interaction databases

STRINGi398577.BamMC406_6340.

Structurei

3D structure databases

ProteinModelPortaliB1Z4V9.
SMRiB1Z4V9. Positions 659-946.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1Z4V9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGKLDPYRR KRHFGATPEP EGAHGRRTQA AAKAAARTRA RGAHPLRFVI
60 70 80 90 100
QEHHARRLHY DFRLELDGTL KSWAVPKGPS FDPSVKRLAV HVEDHPLEYA
110 120 130 140 150
SFEGQIPEGH YGAGSVVVWD EGTWTPDGGL AQAREGYRAG KLTFRLDGEK
160 170 180 190 200
LHGGWALVRS GRQQGRQEQW LLIKERDDDA RSMDEFDVVG ERPGSVHDGA
210 220 230 240 250
ASARADAKNG SARARGSRQG RSEKPATRAA RHDDRAHDGH AGAPVDPSRI
260 270 280 290 300
EGAVRAPLPE HVAPQLATLV DGPPTQGDWC YELKFDGYRI LARISGKGAR
310 320 330 340 350
RHVKLMTREG RDWTAKLRAQ RDALAALDVD AAWLDGEAVV LGKNGLPDFQ
360 370 380 390 400
ALQNAFGGGH SDEITLFVFD LPYLDGYDLR DAPLTARRAL LEPLLADSDP
410 420 430 440 450
TRLRFSPDLG DDVASLIASA CDTGLEGLIG KRAESRYRAG RSPAWIKLKC
460 470 480 490 500
RRRQEFVIGG YTEPSGSRHG FGALLLGVHE PAADGKRRRG PGPLRYVGRV
510 520 530 540 550
GTGFDTRMLD RLTPILRKHE RDKMPFDPPP RERSRTPVHW IEPVLVAECE
560 570 580 590 600
FAEWTGDGIV RQAAFIALRD DKPAARIVRE VPKHTETEVQ MDQRETAQHE
610 620 630 640 650
RHKPGRTAHA GRDTGDTSDT SDTSDTSDTS DTSDGKHPAR SRGSRRAEAD
660 670 680 690 700
DTGPDQLGRV RISHPERVID SHSGTRKIDL ARYWQWVAPW LLPDLKGRPV
710 720 730 740 750
SLVRAPGDIS GELFFQKHAE RREIPFVTQH DGLDPGHGPL LSLDSVDALL
760 770 780 790 800
GAAQMGTIEL HTWNAHASNI ERPDRIVFDL DPDPALPWSA MIDAAQLVRG
810 820 830 840 850
LLDELGLISF CKTSGGKGLH VVVPITRHMG WDEVKDFSRA VAQHVAGALP
860 870 880 890 900
DRFTATMGPK HRRGKIFIDY LRNGRGASTI AAYSVRARPG LGVSVPLRWD
910 920 930 940
EVPDTTGGAQ WTIDTLHERL DRLKRDPWDG YDDTRQRITA QMRARLGTS
Length:949
Mass (Da):104,991
Last modified:May 19, 2008 - v1
Checksum:i290C4B1A9B99DE95
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001027 Genomic DNA. Translation: ACB68772.1.
RefSeqiWP_012372656.1. NC_010557.1.
YP_001816325.1. NC_010557.1.

Genome annotation databases

EnsemblBacteriaiACB68772; ACB68772; BamMC406_6340.
KEGGibac:BamMC406_6340.
PATRICi19043083. VBIBurAmb82852_6818.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001027 Genomic DNA. Translation: ACB68772.1.
RefSeqiWP_012372656.1. NC_010557.1.
YP_001816325.1. NC_010557.1.

3D structure databases

ProteinModelPortaliB1Z4V9.
SMRiB1Z4V9. Positions 659-946.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi398577.BamMC406_6340.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACB68772; ACB68772; BamMC406_6340.
KEGGibac:BamMC406_6340.
PATRICi19043083. VBIBurAmb82852_6818.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciBAMB398577:GH38-6428-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 3 of Burkholderia ambifaria MC40-6."
    Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A.
    , Ramette A., Konstantinidis K., Tiedje J., Richardson P.
    Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MC40-6Imported.

Entry informationi

Entry nameiB1Z4V9_BURA4
AccessioniPrimary (citable) accession number: B1Z4V9
Entry historyi
Integrated into UniProtKB/TrEMBL: May 19, 2008
Last sequence update: May 19, 2008
Last modified: March 31, 2015
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.