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B1Z4V9

- B1Z4V9_BURA4

UniProt

B1Z4V9 - B1Z4V9_BURA4

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Protein
Submitted name:

DNA ligase D

Gene
BamMC406_6340
Organism
Burkholderia ambifaria (strain MC40-6)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBAMB398577:GH38-6428-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:BamMC406_6340Imported
OrganismiBurkholderia ambifaria (strain MC40-6)Imported
Taxonomic identifieri398577 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
ProteomesiUP000001680: Chromosome 3

Interactioni

Protein-protein interaction databases

STRINGi398577.BamMC406_6340.

Structurei

3D structure databases

ProteinModelPortaliB1Z4V9.
SMRiB1Z4V9. Positions 659-946.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1Z4V9-1 [UniParc]FASTAAdd to Basket

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MAGKLDPYRR KRHFGATPEP EGAHGRRTQA AAKAAARTRA RGAHPLRFVI    50
QEHHARRLHY DFRLELDGTL KSWAVPKGPS FDPSVKRLAV HVEDHPLEYA 100
SFEGQIPEGH YGAGSVVVWD EGTWTPDGGL AQAREGYRAG KLTFRLDGEK 150
LHGGWALVRS GRQQGRQEQW LLIKERDDDA RSMDEFDVVG ERPGSVHDGA 200
ASARADAKNG SARARGSRQG RSEKPATRAA RHDDRAHDGH AGAPVDPSRI 250
EGAVRAPLPE HVAPQLATLV DGPPTQGDWC YELKFDGYRI LARISGKGAR 300
RHVKLMTREG RDWTAKLRAQ RDALAALDVD AAWLDGEAVV LGKNGLPDFQ 350
ALQNAFGGGH SDEITLFVFD LPYLDGYDLR DAPLTARRAL LEPLLADSDP 400
TRLRFSPDLG DDVASLIASA CDTGLEGLIG KRAESRYRAG RSPAWIKLKC 450
RRRQEFVIGG YTEPSGSRHG FGALLLGVHE PAADGKRRRG PGPLRYVGRV 500
GTGFDTRMLD RLTPILRKHE RDKMPFDPPP RERSRTPVHW IEPVLVAECE 550
FAEWTGDGIV RQAAFIALRD DKPAARIVRE VPKHTETEVQ MDQRETAQHE 600
RHKPGRTAHA GRDTGDTSDT SDTSDTSDTS DTSDGKHPAR SRGSRRAEAD 650
DTGPDQLGRV RISHPERVID SHSGTRKIDL ARYWQWVAPW LLPDLKGRPV 700
SLVRAPGDIS GELFFQKHAE RREIPFVTQH DGLDPGHGPL LSLDSVDALL 750
GAAQMGTIEL HTWNAHASNI ERPDRIVFDL DPDPALPWSA MIDAAQLVRG 800
LLDELGLISF CKTSGGKGLH VVVPITRHMG WDEVKDFSRA VAQHVAGALP 850
DRFTATMGPK HRRGKIFIDY LRNGRGASTI AAYSVRARPG LGVSVPLRWD 900
EVPDTTGGAQ WTIDTLHERL DRLKRDPWDG YDDTRQRITA QMRARLGTS 949
Length:949
Mass (Da):104,991
Last modified:May 20, 2008 - v1
Checksum:i290C4B1A9B99DE95
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001027 Genomic DNA. Translation: ACB68772.1.
RefSeqiYP_001816325.1. NC_010557.1.

Genome annotation databases

EnsemblBacteriaiACB68772; ACB68772; BamMC406_6340.
GeneIDi6182644.
KEGGibac:BamMC406_6340.
PATRICi19043083. VBIBurAmb82852_6818.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001027 Genomic DNA. Translation: ACB68772.1 .
RefSeqi YP_001816325.1. NC_010557.1.

3D structure databases

ProteinModelPortali B1Z4V9.
SMRi B1Z4V9. Positions 659-946.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 398577.BamMC406_6340.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACB68772 ; ACB68772 ; BamMC406_6340 .
GeneIDi 6182644.
KEGGi bac:BamMC406_6340.
PATRICi 19043083. VBIBurAmb82852_6818.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BAMB398577:GH38-6428-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 3 of Burkholderia ambifaria MC40-6."
    Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A.
    , Ramette A., Konstantinidis K., Tiedje J., Richardson P.
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MC40-6.

Entry informationi

Entry nameiB1Z4V9_BURA4
AccessioniPrimary (citable) accession number: B1Z4V9
Entry historyi
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: May 14, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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