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B1Z3N7 (B1Z3N7_BURA4) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
2-dehydro-3-deoxyphosphooctonate aldolase 2 HAMAP MF_00056
EC=2.5.1.55 HAMAP MF_00056
Alternative name(s):
3-deoxy-D-manno-octulosonic acid 8-phosphate synthase 2 HAMAP MF_00056
KDO-8-phosphate synthase 2 HAMAP MF_00056
Phospho-2-dehydro-3-deoxyoctonate aldolase 2 HAMAP MF_00056
Gene names
Name:kdsA2 HAMAP MF_00056
Ordered Locus Names:BamMC406_5913
OrganismBurkholderia ambifaria (strain MC40-6) [Complete proteome] [HAMAP]
Taxonomic identifier398577 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › Burkholderia cepacia complex

Protein attributes

Sequence length281 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate. HAMAP MF_00056 SAAS SAAS006269

Pathway

Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis. HAMAP MF_00056 SAAS SAAS006269

Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3. HAMAP MF_00056 SAAS SAAS006269

Subcellular location

Cytoplasm By similarity HAMAP MF_00056 SAAS SAAS006269.

Sequence similarities

Belongs to the KdsA family. HAMAP MF_00056

Sequences

Sequence LengthMass (Da)Tools
B1Z3N7 [UniParc].

Last modified May 20, 2008. Version 1.
Checksum: A0E3EBE0295515D0

FASTA28130,755
        10         20         30         40         50         60 
MNVTITPDVT VGNDLPFALF GGLNVLESLD FTLDVCNTFV EVTRRLGIPL VFKASFDKAN 

        70         80         90        100        110        120 
RSSIHSYRGV GFDEGLRIFD EVKRRFGMPV ITDVHEVWQA EPVSKVVDVL QVPAFLARQT 

       130        140        150        160        170        180 
DLVVAIAQTG NAVNIKKPQF MSPTQIEHVV SKCREAGNDK VILCERGSSF GYDNLVVDML 

       190        200        210        220        230        240 
GFGQMRDATG DCPVIFDVTH SLQMRDPHGA ASGGRRRQVL DLARAGMAVG LAGLFLEAHP 

       250        260        270        280 
DPDRARCDGP SALPLALLDP FLQQVKAVDD LVKQLDPLDI R

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References

[1]"Complete sequence of chromosome 3 of Burkholderia ambifaria MC40-6."
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A. expand/collapse author list , Ramette A., Konstantinidis K., Tiedje J., Richardson P.
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001027 Genomic DNA. Translation: ACB68350.1.
RefSeqYP_001815903.1. NC_010557.1.

3D structure databases

ProteinModelPortalB1Z3N7.
SMRB1Z3N7. Positions 8-279.
ModBaseSearch...

Protein-protein interaction databases

STRINGB1Z3N7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6182274.
GenomeReviewsGene locus BamMC406_5913 in contig CP001027_GR.
KEGGbac:BamMC406_5913.
PATRIC19042200. VBIBurAmb82852_6375.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG575990.
OMAHEPHQAA.
ProtClustDBPRK12457.

Family and domain databases

HAMAPMF_00056. KDO8P_synth.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01627.
PANTHERPTHR21057:SF2. KDO8P_synthase. 1 hit.
PfamPF00793. DAHP_synth_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR01362. KDO8P_synth. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB1Z3N7_BURA4
AccessionPrimary (citable) accession number: B1Z3N7
Entry history
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: January 25, 2012
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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