Reviewed, UniProtKB/Swiss-Prot B1Z181 (SELD_BURA4)

Names and origin

Protein names

Recommended name:
    Selenide, water dikinase
    EC=2.7.9.3
Alternative name(s):
    Selenophosphate synthetase
    Selenium donor protein

Gene names

Name:	selD
Ordered Locus Names:	BamMC406_5238

Organism

Burkholderia ambifaria (strain MC40-6) [Complete proteome] [HAMAP]

Taxonomic identifier

398577 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › Burkholderia cepacia complex

Protein attributes

Sequence length	354 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Synthesizes selenophosphate from selenide and ATP By similarity.
Catalytic activity	ATP + selenide + H2O = AMP + selenophosphate + phosphate. HAMAP MF_00625
Cofactor	Magnesium By similarity.
Sequence similarities	Belongs to the selenophosphate synthetase 1 family. Class I subfamily.

Ontologies

Keywords
Ligand	ATP-binding Magnesium Nucleotide-binding Selenium
Molecular function	Kinase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	ATP binding Inferred from electronic annotation. Source: HAMAP magnesium ion binding Inferred from electronic annotation. Source: HAMAP selenide, water dikinase activity Inferred from electronic annotation. Source: HAMAP selenium binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 354	354	Selenide, water dikinase HAMAP MF_00625		PRO_1000130515
Regions
	Nucleotide binding	236 – 242	7	ATP Potential
Sites
	Active site	23	1	Potential
	Site	26	1	Important for catalytic activity By similarity

Sequences

	Sequence		Length	Mass (Da)
	B1Z181-1 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: CAA6647879B3C427	FASTA	354	36,138
	10 20 30 40 50 60 MTEATLTPPA VPRLTSLSHG GGCGCKIAPG VLSELLKRAT PPALFPDLLV GTETSDDAAV 70 80 90 100 110 120 YRLNDEQAIV ATTDFFMPIV DDPFDFGRIA ATNALSDVYA MGGKPILALA LVGMPINVLP 130 140 150 160 170 180 HETIAAILRG GESVCAEAGI PVAGGHSIDS VEPIYGLAAI GVVHPSRVKR NAAARAGDVL 190 200 210 220 230 240 VLGKPLGVGV LSAALKKNQL DAAGYAQMVA TTTKLNRPGA ELAALPGVHA LTDVTGFGLL 250 260 270 280 290 300 GHTLELARGA NLTARVHYAS LPWLAGVEAF VADGVFTGAS GRNWAAYGTD VRLADGLPPV 310 320 330 340 350 AQALLTDPQT SGGLLVACAP EAVDDVLACF RADGFDRAAV IGEMVDGPSR VDVA

References

[1]

"Complete sequence of chromosome 2 of Burkholderia ambifaria MC40-6." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A. , Ramette A., Konstantinidis K., Tiedje J., Richardson P. Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP001026 Genomic DNA. Translation: ACB67683.1.
RefSeq	YP_001811899.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	6180775.
GenomeReviews	Gene locus BamMC406_5238 in contig CP001026_GR.
KEGG	bac:BamMC406_5238.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	GGRFACQ.
Family and domain databases
HAMAP	MF_00625. [Tree]
InterPro	IPR000728. AIR_synth. IPR010918. AIR_synth_C. IPR004536. SelD. [Graphical view]
Pfam	PF00586. AIRS. 1 hit. PF02769. AIRS_C. 1 hit. [Graphical view]
PIRSF	PIRSF036407. Selenphspht_syn. 1 hit.
TIGRFAMs	TIGR00476. selD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

SELD_BURA4

Accession

Primary (citable) accession number: B1Z181

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 14, 2009
Last sequence update:	May 20, 2008
Last modified:	November 3, 2009
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)