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Protein
Submitted name:

Polar amino acid ABC transporter, inner membrane subunit

Gene

BamMC406_3608

Organism
Burkholderia ambifaria (strain MC40-6)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. transporter activity Source: InterPro
Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciBAMB398577:GH38-3683-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Polar amino acid ABC transporter, inner membrane subunitImported
Gene namesi
Ordered Locus Names:BamMC406_3608Imported
OrganismiBurkholderia ambifaria (strain MC40-6)Imported
Taxonomic identifieri398577 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
ProteomesiUP000001680: Chromosome 2

Subcellular locationi

Membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cell membraneSAAS annotation, Membrane

Interactioni

Protein-protein interaction databases

STRINGi398577.BamMC406_3608.

Family & Domainsi

Sequence similaritiesi

Belongs to the binding-protein-dependent transport system permease family.UniRule annotation
Contains ABC transmembrane type-1 domain.SAAS annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSAAS annotation

Phylogenomic databases

eggNOGiCOG4160.
HOGENOMiHOG000267552.
KOiK10015.
OMAiLVSQYWQ.
OrthoDBiEOG6MM1R5.

Family and domain databases

Gene3Di1.10.3720.10. 1 hit.
InterProiIPR010065. AA_ABC_transptr_permease_3TM.
IPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
TIGRFAMsiTIGR01726. HEQRo_perm_3TM. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1Z0F4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIELIGQYWQ NYLYTDGYRF SGLAITLWLL VVSIAFGFAL AVPLAIARAS
60 70 80 90 100
SNRWISGPVW LYTYVFRGTP LYVQLLMCYT GIYSLQVVHD HVLLDTFFRN
110 120 130 140 150
AMNCTLLAFV LNECAYATEI FAGAIKATSA GEIEAGMAYG MSRFKLYTRI
160 170 180 190 200
ILPSALRRSL PSYSNEVILM LHATTLAFTA TVPDILKVTR DVNSATYMSF
210 220 230
QAYGIAAVLY AIVVFTLIWA FRKLETRWLA YLSPRGH
Length:237
Mass (Da):26,715
Last modified:May 20, 2008 - v1
Checksum:i28B094A10FCB2FC2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001026 Genomic DNA. Translation: ACB66075.1.
RefSeqiWP_011660379.1. NC_010552.1.
YP_001810291.1. NC_010552.1.

Genome annotation databases

EnsemblBacteriaiACB66075; ACB66075; BamMC406_3608.
GeneIDi6179566.
KEGGibac:BamMC406_3608.
PATRICi19036855. VBIBurAmb82852_3720.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001026 Genomic DNA. Translation: ACB66075.1.
RefSeqiWP_011660379.1. NC_010552.1.
YP_001810291.1. NC_010552.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi398577.BamMC406_3608.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACB66075; ACB66075; BamMC406_3608.
GeneIDi6179566.
KEGGibac:BamMC406_3608.
PATRICi19036855. VBIBurAmb82852_3720.

Phylogenomic databases

eggNOGiCOG4160.
HOGENOMiHOG000267552.
KOiK10015.
OMAiLVSQYWQ.
OrthoDBiEOG6MM1R5.

Enzyme and pathway databases

BioCyciBAMB398577:GH38-3683-MONOMER.

Family and domain databases

Gene3Di1.10.3720.10. 1 hit.
InterProiIPR010065. AA_ABC_transptr_permease_3TM.
IPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
TIGRFAMsiTIGR01726. HEQRo_perm_3TM. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 2 of Burkholderia ambifaria MC40-6."
    Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A.
    , Ramette A., Konstantinidis K., Tiedje J., Richardson P.
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MC40-6Imported.

Entry informationi

Entry nameiB1Z0F4_BURA4
AccessioniPrimary (citable) accession number: B1Z0F4
Entry historyi
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: March 4, 2015
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.