B1YTH9 (B1YTH9_BURA4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase domain protein EMBL ACB63144.1

Gene names

Ordered Locus Names:

BamMC406_0647

Organism

Burkholderia ambifaria (strain MC40-6) [Complete proteome] [HAMAP] EMBL ACB63144.1

Taxonomic identifier

398577 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › Burkholderia cepacia complex

Protein attributes

Sequence length	232 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. PIRSR PIRSR004848-1
Sequence similarities	Belongs to the UPF0001 family. RuleBase RU004514

Ontologies

Keywords
Ligand	Pyridoxal phosphate PIRSR PIRSR004848-1
Technical term	Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Amino acid modifications
	Modified residue	36	1	N6-(pyridoxal phosphate)lysine By similarity PIRSR PIRSR004848-1

Sequences

	Sequence		Length	Mass (Da)
	B1YTH9 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: B1278A925B7419E1	FASTA	232	24,852
	10 20 30 40 50 60 MSDFAARLDS VHRRIADAAR AAGRDPATVS LLAVSKTFPA DDVRAAHAAG QRAFGENYVQ 70 80 90 100 110 120 ESIDKIDALA DLRTGLEWHF IGPLQSNKTR PVAERFDWVH SIDRLKIAQR LAEQRPAHLP 130 140 150 160 170 180 PLNVCVQVNI SGEASKSGVA PADVAEVARA VAALPTLRLR GLMAIPEPAG DTDAQRAPHR 190 200 210 220 230 ALRALFDTLR ADGLPLDTLS MGMSADLEAA VLEGATIVRV GTALFGARDY SH

References

[1]

"Complete sequence of chromosome 1 of Burkholderia ambifaria MC40-6." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A. , Ramette A., Konstantinidis K., Tiedje J., Richardson P. Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001025 Genomic DNA. Translation: ACB63144.1.
RefSeq	YP_001807360.1. NC_010551.1.
3D structure databases
ProteinModelPortal	B1YTH9.
SMR	B1YTH9. Positions 4-227.
ModBase	Search...
Protein-protein interaction databases
STRING	B1YTH9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6178836.
GenomeReviews	Gene locus BamMC406_0647 in contig CP001025_GR.
KEGG	bac:BamMC406_0647.
PATRIC	19030608. VBIBurAmb82852_0653.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG289671.
OMA	AENREQE.
ProtClustDB	CLSK942070.
Family and domain databases
InterPro	IPR001608. Ala_racemase_N. IPR011078. UPF0001. [Graphical view]
KO	K06997.
PANTHER	PTHR10146. PP_YBL036C. 1 hit.
Pfam	PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PIRSF	PIRSF004848. YBL036c_PLPDEIII. 1 hit.
TIGRFAMs	TIGR00044. TIGR00044. 1 hit.
PROSITE	PS01211. UPF0001. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1YTH9_BURA4

Accession

Primary (citable) accession number: B1YTH9

Entry history

Integrated into UniProtKB/TrEMBL:	May 20, 2008
Last sequence update:	May 20, 2008
Last modified:	December 14, 2011
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)