B1YRE2 (B1YRE2_BURA4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

Ordered Locus Names:

BamMC406_1731 EMBL ACB64216.1

Organism

Burkholderia ambifaria (strain MC40-6) [Complete proteome] [HAMAP] EMBL ACB64216.1

Taxonomic identifier

398577 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › Burkholderia cepacia complex › Burkholderia ambifaria

Protein attributes

Sequence length	361 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding SAAS SAAS007627 RuleBase RU000715
Molecular function	Sigma factor SAAS SAAS007627 RuleBase RU000715
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1YRE2 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: 6DFF8A49795B5713	FASTA	361	40,925
	10 20 30 40 50 60 MPKSKRHEPQ AESEKISRAT QASVERAGAS KDDEDDVAEN ERDLEASDAE ADGDGEREGR 70 80 90 100 110 120 AEAAPDVDDF RALLQAELTA DTIQHYLNRI SVKPLLTVEE EQRYSRLAKA GEFEARQVMI 130 140 150 160 170 180 ERNLRLVVSI AKGYLNRGVP LLDLIEEGNL GLMHAIEKFD PTRGFRFSTY ATWWIRQSIE 190 200 210 220 230 240 RAIMNQARTV RLPVHVIREL NQVLRAKRHL EKNSMSTGEA AERREASIDD IAYLTGKTAE 250 260 270 280 290 300 EVTDILALNE HTASLDAPLD LDPASSLLDL LPDDQSQSPD AEVQHRELET LTRAWLSRLS 310 320 330 340 350 360 DKHRHVIERR FGLNHIEPAT LEELADEMGL TRERVRQIQQ EALVRLKRFF ASNGVRKDAV L

References

[1]

"Complete sequence of chromosome 1 of Burkholderia ambifaria MC40-6." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A. , Ramette A., Konstantinidis K., Tiedje J., Richardson P. Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: MC40-6.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001025 Genomic DNA. Translation: ACB64216.1.
RefSeq	YP_001808432.1. NC_010551.1.
3D structure databases
ProteinModelPortal	B1YRE2.
SMR	B1YRE2. Positions 87-186.
ModBase	Search...
Protein-protein interaction databases
STRING	398577.BamMC406_1731.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACB64216; ACB64216; BamMC406_1731.
GeneID	6176930.
KEGG	bac:BamMC406_1731.
PATRIC	19032897. VBIBurAmb82852_1771.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0568.
HOGENOM	HOG000270273.
KO	K03087.
OMA	QEQHVLK.
ProtClustDB	PRK05657.
Enzyme and pathway databases
BioCyc	BAMB398577:GH38-5486-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR012761. RNA_pol_sigma_RpoS_proteobac. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02394. rpoS_proteo. 1 hit. TIGR02937. sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1YRE2_BURA4

Accession

Primary (citable) accession number: B1YRE2

Entry history

Integrated into UniProtKB/TrEMBL:	May 20, 2008
Last sequence update:	May 20, 2008
Last modified:	May 1, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)