B1YQR8 (B1YQR8_BURA4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
TPR repeat-containing protein EMBL ACB62662.1

Gene names

Ordered Locus Names:

BamMC406_0161

Organism

Burkholderia ambifaria (strain MC40-6) [Complete proteome] [HAMAP] EMBL ACB62662.1

Taxonomic identifier

398577 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › Burkholderia cepacia complex

Protein attributes

Sequence length	598 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Domain	Repeat RuleBase RU003537 TPR repeat RuleBase RU003339
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1YQR8 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: 97300235BC8A048C	FASTA	598	66,457
	10 20 30 40 50 60 MTDLTLSDSP VATIEAALAL HQADRLEEAE TLYRRILDAD PRHADALHLL GLIGHQYGRY 70 80 90 100 110 120 HEATELIMAA IEIKPDATYY YNLGNVMQAN NRPAAAAECF RLAIELRPGY VDAYNNLGNA 130 140 150 160 170 180 QRLAGHAREA VDAFCQVIAL QPDHGQAYNN LGNALLDLNE IPAALEAYQH AVALRPELPE 190 200 210 220 230 240 PRSNLLFAYH YSDAFDPHAY LDEAARFDAL VTQRAQPYST WRVDLSARIG RPLRVGIVSG 250 260 270 280 290 300 DLKAHPVGYF IEGMLAHVKR ERVELHAYPT REIEDDVTAR IKPRFASWTC VAGLDDAAAA 310 320 330 340 350 360 ARIHDDGIDV LIDASGHTIH NRLPLFAWKP APLQVSWPGY FASTGMRVID YVLGDRHVMP 370 380 390 400 410 420 ADEAAHFVER AWHLPDSYLC FTPPAVELDC GPLPMLANSY PTFGYFGKLA KLTDRVIDVW 430 440 450 460 470 480 SRVLRDVPNA RLFVKAPHLD DPREQDALAA RFAAHGIDAA RLLFEGRSPR DEYLAAYRRV 490 500 510 520 530 540 DLMLSPFPYP GGTTTAEALW MGVPVLGRRG ARFLSHICES LLHAARLPEW IADDEDTYVA 550 560 570 580 590 KAVAFARNPA ELAVLRTTLR AQVLASPLCD APRFARHFEE ALHEMWVRRV DAAPGAAA

References

[1]

"Complete sequence of chromosome 1 of Burkholderia ambifaria MC40-6." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A. , Ramette A., Konstantinidis K., Tiedje J., Richardson P. Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001025 Genomic DNA. Translation: ACB62662.1.
RefSeq	YP_001806878.1. NC_010551.1.
3D structure databases
ProteinModelPortal	B1YQR8.
ModBase	Search...
Protein-protein interaction databases
STRING	B1YQR8.
Protein family/group databases
CAZy	GT41. Glycosyltransferase Family 41.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6176298.
GenomeReviews	Gene locus BamMC406_0161 in contig CP001025_GR.
KEGG	bac:BamMC406_0161.
PATRIC	19029581. VBIBurAmb82852_0158.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG684498.
OMA	LCTHAVA.
ProtClustDB	CLSK770198.
Family and domain databases
InterPro	IPR001440. TPR-1. IPR013026. TPR-contain. IPR011990. TPR-like_helical. IPR013105. TPR_2. IPR019734. TPR_repeat. [Graphical view]
Gene3D	G3DSA:1.25.40.10. TPR-like_helical. 1 hit.
Pfam	PF00515. TPR_1. 1 hit. PF07719. TPR_2. 1 hit. [Graphical view]
SMART	SM00028. TPR. 5 hits. [Graphical view]
PROSITE	PS50005. TPR. 5 hits. PS50293. TPR_REGION. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1YQR8_BURA4

Accession

Primary (citable) accession number: B1YQR8

Entry history

Integrated into UniProtKB/TrEMBL:	May 20, 2008
Last sequence update:	May 20, 2008
Last modified:	December 14, 2011
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)