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Protein
Submitted name:

Alpha amylase catalytic region

Gene

Exig_0857

Organism
Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei233 – 2331NucleophileUniRule annotation
Active sitei263 – 2631Proton donorUniRule annotation

GO - Molecular functioni

  1. calcium ion binding Source: InterPro
  2. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciESIB262543:GHBP-933-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:Exig_0857Imported
OrganismiExiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15)Imported
Taxonomic identifieri262543 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillales Family XII. Incertae SedisExiguobacterium
ProteomesiUP000001681: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi262543.Exig_0857.

Structurei

3D structure databases

ProteinModelPortaliB1YLA5.
SMRiB1YLA5. Positions 2-483.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000094847.
KOiK01176.
OMAiLACSARN.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

B1YLA5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MERNHTMMQF FEWHVENDGK HWQRLKERAP ELRAAGITSV WIPPASKGQS
60 70 80 90 100
DEDTGYGIYD VYDLGEFDQK GTVRTKYGTK DELIEAIQVA HENDIAVYAD
110 120 130 140 150
VVMNHKAAAD ELETINVVEV HPEDRSKEIS EEFEIEAWTK FTFPGRNGKY
160 170 180 190 200
SDFIWTHEFF NGTDFDAREE KTGVFKISGK NKDWNDQVDN EFGNYDYLMF
210 220 230 240 250
ANIDYNHPEV REEMINWGNW FKETINCQGF RLDAIKHINY EFVNEFAKSM
260 270 280 290 300
IGDDPDGFYM VGEFWKSDLD DCRQFLDSVD YTIDLFDVPL HYKFHEASQQ
310 320 330 340 350
GQDFDLTTLF ADTLVESHPT NAVTFVDNHD SQPGESLESW IDDWFKQHAY
360 370 380 390 400
ASVLLRKDGY PCVFYGDYYG VQGPHPVEGK KEMIDALLYT RYHKAYGEQE
410 420 430 440 450
DYMDDAHCVG WVRRGVEEFP NSGCAVLLSN ADMCEKRMFV GETRAGEEWF
460 470 480
DYTNHQEEPV VIDEEGFGVF PVPGGGVSVF APRDEQ
Length:486
Mass (Da):56,314
Last modified:May 20, 2008 - v1
Checksum:iBF749DD6EE4D2D70
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001022 Genomic DNA. Translation: ACB60337.1.
RefSeqiYP_001813354.1. NC_010556.1.

Genome annotation databases

EnsemblBacteriaiACB60337; ACB60337; Exig_0857.
GeneIDi6172825.
KEGGiesi:Exig_0857.
PATRICi32135295. VBIExiSib53410_0873.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001022 Genomic DNA. Translation: ACB60337.1.
RefSeqiYP_001813354.1. NC_010556.1.

3D structure databases

ProteinModelPortaliB1YLA5.
SMRiB1YLA5. Positions 2-483.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262543.Exig_0857.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACB60337; ACB60337; Exig_0857.
GeneIDi6172825.
KEGGiesi:Exig_0857.
PATRICi32135295. VBIExiSib53410_0873.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000094847.
KOiK01176.
OMAiLACSARN.
OrthoDBiEOG65QWH3.

Enzyme and pathway databases

BioCyciESIB262543:GHBP-933-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 17290 / JCM 13490 / 255-15Imported.

Entry informationi

Entry nameiB1YLA5_EXIS2
AccessioniPrimary (citable) accession number: B1YLA5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: February 4, 2015
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.