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B1YH49 (B1YH49_EXIS2) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Beta-galactosidase PIRNR PIRNR001084
Short name=Beta-gal PIRNR PIRNR001084
EC=3.2.1.23 PIRNR PIRNR001084
Gene names
Ordered Locus Names:Exig_1655
OrganismExiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) [Complete proteome] [HAMAP]
Taxonomic identifier262543 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacillales › Bacillales Family XII. Incertae Sedis › Exiguobacterium

Protein attributes

Sequence length683 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. PIRNR PIRNR001084

Sequence similarities

Belongs to the glycosyl hydrolase 42 family. PIRNR PIRNR001084

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1561Proton donor By similarity PIRSR PIRSR001084-1
Active site3191Nucleophile By similarity PIRSR PIRSR001084-1
Metal binding1211Zinc By similarity PIRSR PIRSR001084-3
Metal binding1611Zinc By similarity PIRSR PIRSR001084-3
Metal binding1631Zinc By similarity PIRSR PIRSR001084-3
Metal binding1661Zinc By similarity PIRSR PIRSR001084-3
Binding site1171Substrate By similarity PIRSR PIRSR001084-2
Binding site1551Substrate By similarity PIRSR PIRSR001084-2
Binding site3271Substrate By similarity PIRSR PIRSR001084-2

Sequences

Sequence LengthMass (Da)Tools
B1YH49 [UniParc].

Last modified May 20, 2008. Version 1.
Checksum: E9FD330CA03423F2

FASTA68378,981
        10         20         30         40         50         60 
MRQTIYTTKA RHLLHGGDYN PDQWLDVPDV LQEDLRLMRL AHTNTYSIGI FAWSALEPTE 

        70         80         90        100        110        120 
NQFTFDWLDR IIDDIHANGG QVILATPSGA RPAWLSQTYP QVLRVDEHRI RQLHGGRHNH 

       130        140        150        160        170        180 
CLTSPVYREK TQRINRLLAE RYGNHPALLM WHVSNEYGGE CHCPLCQAAF RDWLKVKYET 

       190        200        210        220        230        240 
LDALNASWWS AFWSHTFDDW SQIESPSPIG ESMVHGLNLD WKRFVTDQTI SFFEQESVPL 

       250        260        270        280        290        300 
RELTPNLPIT TNFMADTEDL IPFQALDYSR FAKHVDVVSW DAYPTWHNDW ETTANLAMKV 

       310        320        330        340        350        360 
GFINDLFRSL KQQPFLLMES TPSAVNWHPV NKAKRPGMHL LSSLQMIAHG SDSVLYFQWR 

       370        380        390        400        410        420 
KSRGSSEKFH GAVVDHDRSE ENRVFQEVAH VGQTLEQLDA VVGTTRPAEV GILYDWENNW 

       430        440        450        460        470        480 
ALNDAQGFAN DTKQYPQTLQ EHYRFFYEQD IPVDVITKEQ PFDAYKLLIV PMLYLVSRTT 

       490        500        510        520        530        540 
LRQLQQFVEQ GGTVVATYMT GLVDEYDLAY AGWPEELQTI FGLRPAETDT LYPSDRNHVM 

       550        560        570        580        590        600 
FNGKQYELQD YATVIEVEHA EIVGRYTDDF YRQAPAVTKH QLGQGEAWYI GGRLEATFQR 

       610        620        630        640        650        660 
DMYAMLTDRL NIKASFDTTH TAEVSIQVRR GQEADYGFIL NFSEVEQTVE LFEPLLESAT 

       670        680 
QTEISGQLML KPYEVKIVER KKT

« Hide

References

[1]"Complete sequence of chromosome of Exiguobacterium sibiricum 255-15."
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Chertkov O., Monk C., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F. expand/collapse author list , Land M., Hauser L., Kyrpides N., Mikhailova N., Vishnivetskaya T., Rodrigues D.F., Gilichinsky D., Tiedje J., Richardson P.
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 17290 / JCM 13490 / 255-15.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001022 Genomic DNA. Translation: ACB61110.1.
RefSeqYP_001814127.1. NC_010556.1.

3D structure databases

ProteinModelPortalB1YH49.
ModBaseSearch...

Protein-protein interaction databases

STRINGB1YH49.

Protein family/group databases

CAZyGH42. Glycoside Hydrolase Family 42.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6173313.
GenomeReviewsGene locus Exig_1655 in contig CP001022_GR.
KEGGesi:Exig_1655.
PATRIC32136916. VBIExiSib53410_1683.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG476453.
OMAAKRPGMH.
ProtClustDBCLSK537148.

Family and domain databases

InterProIPR013739. Beta_galactosidase_C.
IPR013738. Beta_galactosidase_Trimer.
IPR003476. Glyco_hydro_42.
IPR013529. Glyco_hydro_42_N.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KOK12308.
PfamPF02449. Glyco_hydro_42. 1 hit.
PF08533. Glyco_hydro_42C. 1 hit.
PF08532. Glyco_hydro_42M. 1 hit.
[Graphical view]
PIRSFPIRSF001084. B-galactosidase. 1 hit.
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB1YH49_EXIS2
AccessionPrimary (citable) accession number: B1YH49
Entry history
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: December 14, 2011
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info