Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

B1Y9Q9 (B1Y9Q9_PYRNV) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:Tneu_0023 EMBL ACB38981.1
OrganismPyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta) (Thermoproteus neutrophilus) [Complete proteome] [HAMAP] EMBL ACB38981.1
Taxonomic identifier444157 [NCBI]
Taxonomic lineageArchaeaCrenarchaeotaThermoproteiThermoprotealesThermoproteaceaePyrobaculum

Protein attributes

Sequence length202 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region96 – 983Sulfate binding

Sites

Metal binding821Nickel 1 PDB 4DF1
Metal binding821Nickel 2
Metal binding831Nickel 1 PDB 4DF1
Metal binding831Nickel 2
Binding site1071Chloride; via amide nitrogen
Binding site1791Sulfate; via amide nitrogen

Sequences

Sequence LengthMass (Da)Tools
B1Y9Q9 [UniParc].

Last modified May 20, 2008. Version 1.
Checksum: 8039512D14714DE5

FASTA20221,927
        10         20         30         40         50         60 
MAANLPLVVA LDTEVLKAID VAKRLKGAVA GFKVGWDLIF EGGISIVGEI ARYGNVIVDL 

        70         80         90        100        110        120 
KIADVPHVAS RVVEKLVNRG ACCVIVHGFL HPSLPRGQHV YVLVKMTAPT IYDEMWEKLL 

       130        140        150        160        170        180 
NSVQDVRGFV LPGNQPEVVA QARKRIGCSY RIISPGIGPQ GGRPGAAIEA GADFEIVGRY 

       190        200 
VLEDPARISQ WAQYRPTCFE TP 

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of Thermoproteus neutrophilus V24Sta."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Mikhailova N., Biddle J.F., Zhang Z., Fitz-Gibbon S.T., Lowe T.M., Saltikov C., House C.H., Richardson P.
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 2338 / JCM 9278 / V24Sta.
[2]"Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus complexed with inhibitor BMP."
Fedorov A.A., Fedorov E.V., Desai B., Gerlt J.A., Almo S.C.
Submitted (JAN-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) IN COMPLEX WITH NICKEL.
[3]"Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus."
Fedorov A.A., Fedorov E.V., Desai B., Gerlt J.A., Almo S.C.
Submitted (JAN-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS) IN COMPLEX WITH CHLORIDE; NICKEL AND SULFATE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001014 Genomic DNA. Translation: ACB38981.1.
RefSeqYP_001793427.1. NC_010525.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4DF0X-ray1.50A/B1-202[»]
4DF1X-ray1.90A/B1-202[»]
ProteinModelPortalB1Y9Q9.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING444157.Tneu_0023.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACB38981; ACB38981; Tneu_0023.
GeneID6166266.
KEGGtne:Tneu_0023.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0284.
HOGENOMHOG000226069.
KOK01591.
OMAYVLAKMT.

Enzyme and pathway databases

BioCycTNEU444157:GHL2-23-MONOMER.

Family and domain databases

Gene3D3.20.20.70. 1 hit.
InterProIPR013785. Aldolase_TIM.
IPR001754. OMPdeCOase_dom.
IPR011060. RibuloseP-bd_barrel.
[Graphical view]
PfamPF00215. OMPdecase. 1 hit.
[Graphical view]
SMARTSM00934. OMPdecase. 1 hit.
[Graphical view]
SUPFAMSSF51366. SSF51366. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB1Y9Q9_PYRNV
AccessionPrimary (citable) accession number: B1Y9Q9
Entry history
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: June 11, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)