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B1Y8A7

- B1Y8A7_LEPCP

UniProt

B1Y8A7 - B1Y8A7_LEPCP

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Protein
Submitted name: ATP dependent DNA ligase
Gene
Lcho_2712
Organism
Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix discophora (strain SP-6))
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciLCHO395495:GHYL-2756-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Lcho_2712Imported
OrganismiLeptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix discophora (strain SP-6))Imported
Taxonomic identifieri395495 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesLeptothrix
ProteomesiUP000001693: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi395495.Lcho_2712.

Structurei

3D structure databases

ProteinModelPortaliB1Y8A7.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiSLVTYRY.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
IPR006311. TAT_signal.
IPR015893. Tet_transcr_reg_TetR-like_C.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
PS51318. TAT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1Y8A7-1 [UniParc]FASTAAdd to Basket

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MDTRPDRRRW LAWGLAQAWA VPMAGALGSL GLRHDSARAE PLAPVPPALL    50
LARPAGPDLD VSSHLVSEKL DGVRAFWSGR QLLLRSGIPI RAPADFTARL 100
PTRALDGELW LGRSRFDAMS ALIRREHSAD DPLWREVRYA VFELPDAPGD 150
FAQRHRAMRE LLPGTDAVAG AHVVQQRRLD DRQELDRWLA EVIAAGGEGL 200
MLHRADAPYV TGRSDWLLKL KPQLDAEAMV IGHLPGKGRH AGRLGALRVR 250
TPDGREFALG SGLSDAERDD PPAPGRWVTY RYRGLTNSGL PRFATFWRMH 300
DLP 303
Length:303
Mass (Da):33,626
Last modified:May 20, 2008 - v1
Checksum:iBBCA7A80BF4B4107
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001013 Genomic DNA. Translation: ACB34977.1.
RefSeqiWP_012347731.1. NC_010524.1.
YP_001791742.1. NC_010524.1.

Genome annotation databases

EnsemblBacteriaiACB34977; ACB34977; Lcho_2712.
GeneIDi6162318.
KEGGilch:Lcho_2712.
PATRICi22395827. VBILepCho83238_2741.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001013 Genomic DNA. Translation: ACB34977.1 .
RefSeqi WP_012347731.1. NC_010524.1.
YP_001791742.1. NC_010524.1.

3D structure databases

ProteinModelPortali B1Y8A7.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 395495.Lcho_2712.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACB34977 ; ACB34977 ; Lcho_2712 .
GeneIDi 6162318.
KEGGi lch:Lcho_2712.
PATRICi 22395827. VBILepCho83238_2741.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000293070.
KOi K01971.
OMAi SLVTYRY.
OrthoDBi EOG60919Q.

Enzyme and pathway databases

BioCyci LCHO395495:GHYL-2756-MONOMER.

Family and domain databases

Gene3Di 1.10.357.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
IPR006311. TAT_signal.
IPR015893. Tet_transcr_reg_TetR-like_C.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
PS51318. TAT. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51168 / LMG 8142 / SP-6.

Entry informationi

Entry nameiB1Y8A7_LEPCP
AccessioniPrimary (citable) accession number: B1Y8A7
Entry historyi
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: September 3, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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