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B1Y8A7

- B1Y8A7_LEPCP

UniProt

B1Y8A7 - B1Y8A7_LEPCP

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Lcho_2712

Organism
Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix discophora (strain SP-6))
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 40 (01 Oct 2014)
      Sequence version 1 (20 May 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciLCHO395495:GHYL-2756-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Lcho_2712Imported
    OrganismiLeptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix discophora (strain SP-6))Imported
    Taxonomic identifieri395495 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesLeptothrix
    ProteomesiUP000001693: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi395495.Lcho_2712.

    Structurei

    3D structure databases

    ProteinModelPortaliB1Y8A7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000293070.
    KOiK01971.
    OMAiSLVTYRY.
    OrthoDBiEOG60919Q.

    Family and domain databases

    Gene3Di1.10.357.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    IPR006311. TAT_signal.
    IPR015893. Tet_transcr_reg_TetR-like_C.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    PS51318. TAT. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B1Y8A7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDTRPDRRRW LAWGLAQAWA VPMAGALGSL GLRHDSARAE PLAPVPPALL    50
    LARPAGPDLD VSSHLVSEKL DGVRAFWSGR QLLLRSGIPI RAPADFTARL 100
    PTRALDGELW LGRSRFDAMS ALIRREHSAD DPLWREVRYA VFELPDAPGD 150
    FAQRHRAMRE LLPGTDAVAG AHVVQQRRLD DRQELDRWLA EVIAAGGEGL 200
    MLHRADAPYV TGRSDWLLKL KPQLDAEAMV IGHLPGKGRH AGRLGALRVR 250
    TPDGREFALG SGLSDAERDD PPAPGRWVTY RYRGLTNSGL PRFATFWRMH 300
    DLP 303
    Length:303
    Mass (Da):33,626
    Last modified:May 20, 2008 - v1
    Checksum:iBBCA7A80BF4B4107
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001013 Genomic DNA. Translation: ACB34977.1.
    RefSeqiWP_012347731.1. NC_010524.1.
    YP_001791742.1. NC_010524.1.

    Genome annotation databases

    EnsemblBacteriaiACB34977; ACB34977; Lcho_2712.
    GeneIDi6162318.
    KEGGilch:Lcho_2712.
    PATRICi22395827. VBILepCho83238_2741.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001013 Genomic DNA. Translation: ACB34977.1 .
    RefSeqi WP_012347731.1. NC_010524.1.
    YP_001791742.1. NC_010524.1.

    3D structure databases

    ProteinModelPortali B1Y8A7.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 395495.Lcho_2712.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACB34977 ; ACB34977 ; Lcho_2712 .
    GeneIDi 6162318.
    KEGGi lch:Lcho_2712.
    PATRICi 22395827. VBILepCho83238_2741.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000293070.
    KOi K01971.
    OMAi SLVTYRY.
    OrthoDBi EOG60919Q.

    Enzyme and pathway databases

    BioCyci LCHO395495:GHYL-2756-MONOMER.

    Family and domain databases

    Gene3Di 1.10.357.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    IPR006311. TAT_signal.
    IPR015893. Tet_transcr_reg_TetR-like_C.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    PS51318. TAT. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 51168 / LMG 8142 / SP-6Imported.

    Entry informationi

    Entry nameiB1Y8A7_LEPCP
    AccessioniPrimary (citable) accession number: B1Y8A7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 20, 2008
    Last sequence update: May 20, 2008
    Last modified: October 1, 2014
    This is version 40 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3