B1Y8A7 (B1Y8A7_LEPCP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ACB34977.1

Gene names

Ordered Locus Names:

Lcho_2712

Organism

Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix discophora (strain SP-6)) [Complete proteome] [HAMAP] EMBL ACB34977.1

Taxonomic identifier

395495 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › unclassified Burkholderiales › Burkholderiales Genera incertae sedis › Leptothrix › Leptothrix cholodnii

Protein attributes

Sequence length	303 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACB34977.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1Y8A7 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: BBCA7A80BF4B4107	FASTA	303	33,626
	10 20 30 40 50 60 MDTRPDRRRW LAWGLAQAWA VPMAGALGSL GLRHDSARAE PLAPVPPALL LARPAGPDLD 70 80 90 100 110 120 VSSHLVSEKL DGVRAFWSGR QLLLRSGIPI RAPADFTARL PTRALDGELW LGRSRFDAMS 130 140 150 160 170 180 ALIRREHSAD DPLWREVRYA VFELPDAPGD FAQRHRAMRE LLPGTDAVAG AHVVQQRRLD 190 200 210 220 230 240 DRQELDRWLA EVIAAGGEGL MLHRADAPYV TGRSDWLLKL KPQLDAEAMV IGHLPGKGRH 250 260 270 280 290 300 AGRLGALRVR TPDGREFALG SGLSDAERDD PPAPGRWVTY RYRGLTNSGL PRFATFWRMH DLP

References

[1]

"Complete sequence of Leptothrix cholodnii SP-6." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Lykidis A., Emerson D., Richardson P. Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51168 / LMG 8142 / SP-6.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001013 Genomic DNA. Translation: ACB34977.1.
RefSeq	YP_001791742.1. NC_010524.1.
3D structure databases
ProteinModelPortal	B1Y8A7.
ModBase	Search...
Protein-protein interaction databases
STRING	395495.Lcho_2712.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACB34977; ACB34977; Lcho_2712.
GeneID	6162318.
KEGG	lch:Lcho_2712.
PATRIC	22395827. VBILepCho83238_2741.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000293070.
KO	K01971.
OMA	VRGYWDG.
ProtClustDB	PRK09125.
Enzyme and pathway databases
BioCyc	LCHO395495:GHYL-2756-MONOMER.
Family and domain databases
Gene3D	1.10.357.10. 1 hit. 2.40.50.140. 1 hit.
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR012340. NA-bd_OB-fold. IPR006311. TAT_signal. IPR015893. Tet_transcr_reg_TetR-like_C. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. PS51318. TAT. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1Y8A7_LEPCP

Accession

Primary (citable) accession number: B1Y8A7

Entry history

Integrated into UniProtKB/TrEMBL:	May 20, 2008
Last sequence update:	May 20, 2008
Last modified:	May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)