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B1Y8A7 (B1Y8A7_LEPCP) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length303 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACB34977.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B1Y8A7 [UniParc].

Last modified May 20, 2008. Version 1.
Checksum: BBCA7A80BF4B4107

FASTA30333,626
        10         20         30         40         50         60 
MDTRPDRRRW LAWGLAQAWA VPMAGALGSL GLRHDSARAE PLAPVPPALL LARPAGPDLD 

        70         80         90        100        110        120 
VSSHLVSEKL DGVRAFWSGR QLLLRSGIPI RAPADFTARL PTRALDGELW LGRSRFDAMS 

       130        140        150        160        170        180 
ALIRREHSAD DPLWREVRYA VFELPDAPGD FAQRHRAMRE LLPGTDAVAG AHVVQQRRLD 

       190        200        210        220        230        240 
DRQELDRWLA EVIAAGGEGL MLHRADAPYV TGRSDWLLKL KPQLDAEAMV IGHLPGKGRH 

       250        260        270        280        290        300 
AGRLGALRVR TPDGREFALG SGLSDAERDD PPAPGRWVTY RYRGLTNSGL PRFATFWRMH 


DLP 

« Hide

References

[1]"Complete sequence of Leptothrix cholodnii SP-6."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Lykidis A., Emerson D., Richardson P.
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 51168 / LMG 8142 / SP-6.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001013 Genomic DNA. Translation: ACB34977.1.
RefSeqYP_001791742.1. NC_010524.1.

3D structure databases

ProteinModelPortalB1Y8A7.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING395495.Lcho_2712.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACB34977; ACB34977; Lcho_2712.
GeneID6162318.
KEGGlch:Lcho_2712.
PATRIC22395827. VBILepCho83238_2741.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000293070.
KOK01971.
OMASLVTYRY.
OrthoDBEOG60919Q.

Enzyme and pathway databases

BioCycLCHO395495:GHYL-2756-MONOMER.

Family and domain databases

Gene3D1.10.357.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
IPR006311. TAT_signal.
IPR015893. Tet_transcr_reg_TetR-like_C.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
PS51318. TAT. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB1Y8A7_LEPCP
AccessionPrimary (citable) accession number: B1Y8A7
Entry history
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: June 11, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)