B1Y6H0 (B1Y6H0_LEPCP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Glutamate racemase HAMAP MF_00258
EC=5.1.1.3 HAMAP MF_00258

Gene names

Name:	murI HAMAP MF_00258
Ordered Locus Names:	Lcho_2541

Organism

Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix discophora (strain SP-6)) [Complete proteome] [HAMAP] EMBL ACB34806.1

Taxonomic identifier

395495 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Leptothrix

Protein attributes

Sequence length	272 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Provides the (R)-glutamate required for cell wall biosynthesis By similarity. HAMAP MF_00258 SAAS SAAS015942
Catalytic activity	L-glutamate = D-glutamate. HAMAP MF_00258 SAAS SAAS015942
Pathway	Cell wall biogenesis; peptidoglycan biosynthesis. HAMAP MF_00258 SAAS SAAS015942
Sequence similarities	Belongs to the aspartate/glutamate racemases family. HAMAP MF_00258

Ontologies

Keywords
Biological process	Cell shape Cell wall biogenesis/degradation HAMAP MF_00258 SAAS SAAS015942 Peptidoglycan synthesis HAMAP MF_00258 SAAS SAAS015942
Molecular function	Isomerase HAMAP MF_00258 SAAS SAAS015942 EMBL ACB34806.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cellular cell wall organization Inferred from electronic annotation. Source: UniProtKB-KW peptidoglycan biosynthetic process Inferred from electronic annotation. Source: HAMAP regulation of cell shape Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	glutamate racemase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1Y6H0 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: 7BF6E1B59582FB58	FASTA	272	29,079
	10 20 30 40 50 60 MPTSPLQHRV RIGVFDSGLG GLSVLRAIHE LLPSATLMYV ADSGHAPYGE RSVAYVEERS 70 80 90 100 110 120 LRIAAFLRDQ GAQVLVVACN TATAAAVQAL RMHHRDWAIV GVEPGIKPAA AMTRNGRIGV 130 140 150 160 170 180 LATEGTLRSD RFKLLAQAHA AHVELFLQAC PGLAAAIESG ALTSPAVTER VQTCCAPLRE 190 200 210 220 230 240 HQVDTVVLGC THYPFVANQI AAALGPDVVL IDTADAVARR TLALSLAQAA PDDDLNQDDR 250 260 270 PVTRMWTTGD RLLLANVAER WLTFPCTVDT LP

References

[1]

"Complete sequence of Leptothrix cholodnii SP-6." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Lykidis A., Emerson D., Richardson P. Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51168 / LMG 8142 / SP-6.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001013 Genomic DNA. Translation: ACB34806.1.
RefSeq	YP_001791571.1. NC_010524.1.
3D structure databases
ProteinModelPortal	B1Y6H0.
ModBase	Search...
Protein-protein interaction databases
STRING	B1Y6H0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6162551.
GenomeReviews	Gene locus Lcho_2541 in contig CP001013_GR.
KEGG	lch:Lcho_2541.
PATRIC	22395457. VBILepCho83238_2562.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG645102.
OMA	VPMVEEG.
ProtClustDB	CLSK2321903.
Family and domain databases
HAMAP	MF_00258. Glu_racemase. [Tree]
InterPro	IPR015942. Asp/Glu/hydantoin_racemase. IPR001920. Asp/Glu_race. IPR018187. Asp/Glu_racemase_AS. IPR004391. Glu_race. [Graphical view]
Gene3D	G3DSA:3.40.50.1860. Asp/Glu_race. 1 hit.
KO	K01776.
PANTHER	PTHR21198. PTHR21198. 1 hit.
Pfam	PF01177. Asp_Glu_race. 1 hit. [Graphical view]
SUPFAM	SSF53681. Asp/Glu_race. 2 hits.
TIGRFAMs	TIGR00067. Glut_race. 1 hit.
PROSITE	PS00923. ASP_GLU_RACEMASE_1. 1 hit. PS00924. ASP_GLU_RACEMASE_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1Y6H0_LEPCP

Accession

Primary (citable) accession number: B1Y6H0

Entry history

Integrated into UniProtKB/TrEMBL:	May 20, 2008
Last sequence update:	May 20, 2008
Last modified:	December 14, 2011
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)