B1Y1N5 (B1Y1N5_LEPCP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glycoside hydrolase family 4 EMBL ACB35497.1

Gene names

Ordered Locus Names:

Lcho_3239

Organism

Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix discophora (strain SP-6)) [Complete proteome] [HAMAP] EMBL ACB35497.1

Taxonomic identifier

395495 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Leptothrix

Protein attributes

Sequence length	474 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Hydrolase EMBL ACB35497.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro nucleotide binding Inferred from electronic annotation. Source: InterPro oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1Y1N5 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: 28312F0A5B536C1F	FASTA	474	53,245
	10 20 30 40 50 60 MRDASPRRLK ITLIGAGSTV FTRNLLGDML SHPELAGAEI ALHDIDEHRL RLSEKVAYRI 70 80 90 100 110 120 ADAVGAKPVI TASTDRRRAL DGARFVLNTI QVGGYKPATV TDFDIPKKYG LEQTIGDTLG 130 140 150 160 170 180 IGGIMRGLRT IPVQLAMLRD MDELCAPGAV HLNYVNPMAM ITWALNRAST RVPTVGLCHS 190 200 210 220 230 240 VQHTAQELAN DLGLPVDEIQ YHCAGINHMS FYLRFERNGE DLYPKLRDIQ REGRMPAWNR 250 260 270 280 290 300 VRYEMLRQLG HFPTESSEHF AEYVPWFIKQ GREELLRKFN IPLDEYPGRC QVFEHAWPYI 310 320 330 340 350 360 ERELEVPGSQ DPAALLAQLR AADIHVMQRE IEGAPQMLEG LRSVKRSVEY GSAIIHSIVT 370 380 390 400 410 420 GQPRVINGNV LNHQLIDNLP QGCAIEVPCL VDHNGVQPTR VGKLPVHLAA LMRTNVNVQE 430 440 450 460 470 MVVESVLEQR RDHVYHAAML DPHTAATLDL DQIRAMVDEL LAAHRPFLPE YLHG

References

[1]

"Complete sequence of Leptothrix cholodnii SP-6." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Lykidis A., Emerson D., Richardson P. Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51168 / LMG 8142 / SP-6.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001013 Genomic DNA. Translation: ACB35497.1.
RefSeq	YP_001792262.1. NC_010524.1.
3D structure databases
ProteinModelPortal	B1Y1N5.
ModBase	Search...
Protein-protein interaction databases
STRING	B1Y1N5.
Protein family/group databases
CAZy	GH4. Glycoside Hydrolase Family 4.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6161672.
GenomeReviews	Gene locus Lcho_3239 in contig CP001013_GR.
KEGG	lch:Lcho_3239.
PATRIC	22396887. VBILepCho83238_3267.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG511715.
OMA	MAINTWA.
ProtClustDB	PRK15076.
Family and domain databases
InterPro	IPR001088. Glyco_hydro_4. IPR022616. Glyco_hydro_4_C. IPR015955. Lactate_DH/Glyco_Ohase_4_C. IPR016040. NAD(P)-bd_dom. [Graphical view]
Gene3D	G3DSA:3.90.110.10. lact_mal_DH. 1 hit. G3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
KO	K07406.
Pfam	PF02056. Glyco_hydro_4. 1 hit. PF11975. Glyco_hydro_4C. 1 hit. [Graphical view]
PRINTS	PR00732. GLHYDRLASE4.
SUPFAM	SSF56327. Lactate_DH/Glyco_hydro_4_C. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B1Y1N5_LEPCP

Accession

Primary (citable) accession number: B1Y1N5

Entry history

Integrated into UniProtKB/TrEMBL:	May 20, 2008
Last sequence update:	May 20, 2008
Last modified:	December 14, 2011
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)