B1Y142 (B1Y142_LEPCP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribulokinase HAMAP MF_00520
EC=2.7.1.16 HAMAP MF_00520

Gene names

Name:	araB HAMAP MF_00520
Ordered Locus Names:	Lcho_3201

Organism

Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix discophora (strain SP-6)) [Complete proteome] [HAMAP] EMBL ACB35459.1

Taxonomic identifier

395495 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Leptothrix

Protein attributes

Sequence length	564 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. HAMAP MF_00520
Pathway	Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3. HAMAP MF_00520
Sequence similarities	Belongs to the ribulokinase family. HAMAP MF_00520

Ontologies

Keywords
Biological process	Arabinose catabolism HAMAP MF_00520 Carbohydrate metabolism
Ligand	ATP-binding HAMAP MF_00520 Nucleotide-binding
Molecular function	Kinase HAMAP MF_00520 EMBL ACB35459.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	L-arabinose catabolic process Inferred from electronic annotation. Source: HAMAP
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ribulokinase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1Y142 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: 61CAF91BF31EE3DC	FASTA	564	60,922
	10 20 30 40 50 60 MNPTDAISLG LDFGSDSVRV LAVRCRDGAE LATHVVAYPR WAEGRYCDAV TQRFRHHPLD 70 80 90 100 110 120 YTESFTQAVR EVVDELVRQF GPAGREAIVG IGVDSTGSTP APIDEQGRVL ALRPEFAHNP 130 140 150 160 170 180 NAMFVLWKDH TAIVEAEALN ALAHGGEHTD YTRYAGGVYS SEWFWAKALH VSRADAQVHA 190 200 210 220 230 240 ATRSWVELCD WVPALLCGRS APAVLPRGRC AAGHKALWHP TWGGLPSQEF LSALDPLLTE 250 260 270 280 290 300 HLDAPLFTHS QTAEQSLGVL SAEWADRLGL PAHVVVSGGA FDCHMGAVGA NAQPYTLVKV 310 320 330 340 350 360 IGTSTCDILL ADAELIGERS IEGICGQVDG SVVPGLIGLE AGQSAFGDMY AWLAKLVGWS 370 380 390 400 410 420 LEMAGTLRPH LQGELAGLHE HILPTLAEQW MQRQDLEHLP LVLDWLNGRR TPFANQRLQG 430 440 450 460 470 480 VVADLTLGTD APALFGGFVA ATAFGARAIT ESFERQGVPV HKVLTLGGIA RKSPTVMQVM 490 500 510 520 530 540 ADVMNREVEV VASDQCCALG AAIFAAVAAG VFADVPSAQA AMASTVERIY KPDAERAARY 550 560 ERLYQRYQRF AERTEPLYAA GEVR

References

[1]

"Complete sequence of Leptothrix cholodnii SP-6." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Lykidis A., Emerson D., Richardson P. Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51168 / LMG 8142 / SP-6.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001013 Genomic DNA. Translation: ACB35459.1.
RefSeq	YP_001792224.1. NC_010524.1.
3D structure databases
ProteinModelPortal	B1Y142.
ModBase	Search...
Protein-protein interaction databases
STRING	B1Y142.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6162326.
GenomeReviews	Gene locus Lcho_3201 in contig CP001013_GR.
KEGG	lch:Lcho_3201.
PATRIC	22396811. VBILepCho83238_3229.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG312681.
OMA	NGRRTPD.
ProtClustDB	PRK04123.
Family and domain databases
HAMAP	MF_00520. Ribulokinase. [Tree]
InterPro	IPR000577. Carb_kinase_FGGY. IPR018485. Carb_kinase_FGGY_C. IPR005929. L_ribulokin. [Graphical view]
KO	K00853.
PANTHER	PTHR10196. FGGY_kin. 1 hit.
Pfam	PF02782. FGGY_C. 1 hit. [Graphical view]
TIGRFAMs	TIGR01234. L-ribulokinase. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B1Y142_LEPCP

Accession

Primary (citable) accession number: B1Y142

Entry history

Integrated into UniProtKB/TrEMBL:	May 20, 2008
Last sequence update:	May 20, 2008
Last modified:	December 14, 2011
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)