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B1Y0P9 (GLGA_LEPCP) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Glycogen synthase

EC=2.4.1.21
Alternative name(s):
Starch [bacterial glycogen] synthase
Gene names
Name:glgA
Ordered Locus Names:Lcho_1890
OrganismLeptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix discophora (strain SP-6)) [Complete proteome] [HAMAP]
Taxonomic identifier395495 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesLeptothrix

Protein attributes

Sequence length487 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Synthesizes alpha-1,4-glucan chains using ADP-glucose By similarity. HAMAP-Rule MF_00484

Catalytic activity

ADP-glucose + (1,4-alpha-D-glucosyl)(n) = ADP + (1,4-alpha-D-glucosyl)(n+1). HAMAP-Rule MF_00484

Pathway

Glycan biosynthesis; glycogen biosynthesis. HAMAP-Rule MF_00484

Sequence similarities

Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.

Ontologies

Keywords
   Biological processGlycogen biosynthesis
   Molecular functionGlycosyltransferase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processglycogen biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Molecular_functionstarch synthase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 487487Glycogen synthase HAMAP-Rule MF_00484
PRO_1000126085

Sites

Binding site151ADP-glucose By similarity

Sequences

Sequence LengthMass (Da)Tools
B1Y0P9 [UniParc].

Last modified May 20, 2008. Version 1.
Checksum: 36BF73B11A7D2D5E

FASTA48753,120
        10         20         30         40         50         60 
MRILQACAEI FPLLKTGGLA DVAGALPPAL RALGAEVRVV VPGFPAILAG LVDAIEVARL 

        70         80         90        100        110        120 
EPPPAMVMAR GARLLYGRLP ACDVDAYVIN SPDHYHRDGG PYNDARQHPY DDNHLRFGLL 

       130        140        150        160        170        180 
GWVAAKLADG LDPYWAPRVV HAHDWHAALA PAYLRALEWA RGRRLAGSVY TVHNLAYQGF 

       190        200        210        220        230        240 
FPAHHFGDLG LPAAYNQVHG LEFYGQISFM KGGLYFADRI TTVSPTYARE IQGAEQGCGL 

       250        260        270        280        290        300 
DGLLRDRDAD LSGILNGVDD AVWNPAGDAL IPATYTRRKL TGKAQCKATL QAELGLAEDP 

       310        320        330        340        350        360 
AVPLLCVVSR LTEQKGLHLV LQALPALIER GFQFALLGSG DAGMENEFRR LAEQHPTAAA 

       370        380        390        400        410        420 
VRLGYDEAFA HRLIAGSDLI LVPSRFEPCG LTQLYGLKYG TLPVVRRVGG LVDTVADARL 

       430        440        450        460        470        480 
ETLDHDATGF VFDDFSADGL IGACLRAKAL FRRRADWLQV QRRGMQQPFG WEDSARQYLK 


LYQQVAA 

« Hide

References

[1]"Complete sequence of Leptothrix cholodnii SP-6."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Lykidis A., Emerson D., Richardson P.
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 51168 / LMG 8142 / SP-6.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001013 Genomic DNA. Translation: ACB34157.1.
RefSeqYP_001790922.1. NC_010524.1.

3D structure databases

ProteinModelPortalB1Y0P9.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING395495.Lcho_1890.

Protein family/group databases

CAZyGT5. Glycosyltransferase Family 5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACB34157; ACB34157; Lcho_1890.
GeneID6159917.
KEGGlch:Lcho_1890.
PATRIC22394121. VBILepCho83238_1904.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0297.
HOGENOMHOG000294941.
KOK00703.
OMAHEMVQNC.
OrthoDBEOG6JTC6Z.

Enzyme and pathway databases

BioCycLCHO395495:GHYL-1917-MONOMER.
UniPathwayUPA00164.

Family and domain databases

HAMAPMF_00484. Glycogen_synth.
InterProIPR001296. Glyco_trans_1.
IPR011835. Glycogen/starch_synth.
IPR013534. Starch_synth_cat_dom.
[Graphical view]
PfamPF08323. Glyco_transf_5. 1 hit.
PF00534. Glycos_transf_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR02095. glgA. 1 hit.
ProtoNetSearch...

Entry information

Entry nameGLGA_LEPCP
AccessionPrimary (citable) accession number: B1Y0P9
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: May 20, 2008
Last modified: May 14, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways