B1Y0J9 (B1Y0J9_LEPCP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribonuclease PH HAMAP-Rule MF_00564
Short name=RNase PH HAMAP-Rule MF_00564
EC=2.7.7.56 HAMAP-Rule MF_00564

Alternative name(s):
tRNA nucleotidyltransferase HAMAP-Rule MF_00564

Gene names

Name:	rph HAMAP-Rule MF_00564
Ordered Locus Names:	Lcho_0705

Organism

Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix discophora (strain SP-6)) [Complete proteome] [HAMAP] EMBL ACB32980.1

Taxonomic identifier

395495 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › unclassified Burkholderiales › Burkholderiales Genera incertae sedis › Leptothrix › Leptothrix cholodnii

Protein attributes

Sequence length	241 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP-Rule MF_00564 SAAS SAAS002381
Catalytic activity	tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP-Rule MF_00564 SAAS SAAS002381
Sequence similarities	Belongs to the RNase PH family. HAMAP-Rule MF_00564

Ontologies

Keywords
Biological process	tRNA processing HAMAP-Rule MF_00564 SAAS SAAS002381
Molecular function	Nucleotidyltransferase HAMAP-Rule MF_00564 SAAS SAAS002381 EMBL ACB32980.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	tRNA processing Inferred from electronic annotation. Source: HAMAP
Molecular_function	tRNA binding Inferred from electronic annotation. Source: HAMAP tRNA nucleotidyltransferase activity Inferred from electronic annotation. Source: HAMAP tRNA-specific ribonuclease activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1Y0J9 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: C060C982C26AA38A	FASTA	241	25,268
	10 20 30 40 50 60 MSSTRPLGRA ADALRPVRIT RSYTKHAEGS VLIEFGDTQV LCTASVEEKV PPHKKGSGEG 70 80 90 100 110 120 WVTAEYGMLP RATHTRSARE AAKGKQSGRT QEIQRLIGRS LRCVFDLAAL GERSILIDCD 130 140 150 160 170 180 VLQADGGTRT ASITGAFVAA HDAVQGLIAQ GKLKRSPIRD FVAAVSVGIL DGVALLDLEY 190 200 210 220 230 240 VEDSACDTDM NIVMTGAGGF VEVQGTAEGV AFSRAEMDQL LALGSAGIAE LVAAQKAALG V

References

[1]

"Complete sequence of Leptothrix cholodnii SP-6." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Lykidis A., Emerson D., Richardson P. Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51168 / LMG 8142 / SP-6.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001013 Genomic DNA. Translation: ACB32980.1.
RefSeq	YP_001789745.1. NC_010524.1.
3D structure databases
ProteinModelPortal	B1Y0J9.
SMR	B1Y0J9. Positions 5-240.
ModBase	Search...
Protein-protein interaction databases
STRING	395495.Lcho_0705.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACB32980; ACB32980; Lcho_0705.
GeneID	6163753.
KEGG	lch:Lcho_0705.
PATRIC	22391689. VBILepCho83238_0706.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0689.
HOGENOM	HOG000229516.
KO	K00989.
OMA	MLPRATG.
Enzyme and pathway databases
BioCyc	LCHO395495:GHYL-714-MONOMER.
Family and domain databases
HAMAP	MF_00564. RNase_PH.
InterPro	IPR001247. ExoRNase_PH_dom1. IPR015847. ExoRNase_PH_dom2. IPR020568. Ribosomal_S5_D2-typ_fold. IPR002381. RNase_PH_bac-type. IPR018336. RNase_PH_CS. [Graphical view]
Pfam	PF01138. RNase_PH. 1 hit. PF03725. RNase_PH_C. 1 hit. [Graphical view]
SUPFAM	SSF55666. 3_ExoRNase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMs	TIGR01966. RNasePH. 1 hit.
PROSITE	PS01277. RIBONUCLEASE_PH. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1Y0J9_LEPCP

Accession

Primary (citable) accession number: B1Y0J9

Entry history

Integrated into UniProtKB/TrEMBL:	May 20, 2008
Last sequence update:	May 20, 2008
Last modified:	May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)