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B1XYI1 (B1XYI1_LEPCP) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Malate synthase G HAMAP MF_00641
EC=2.3.3.9 HAMAP MF_00641
Gene names
Name:glcB HAMAP MF_00641
Ordered Locus Names:Lcho_4166
OrganismLeptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix discophora (strain SP-6)) [Complete proteome] [HAMAP] EMBL ACB36417.1
Taxonomic identifier395495 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Leptothrix

Protein attributes

Sequence length734 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Acetyl-CoA + H2O + glyoxylate = (S)-malate + CoA. HAMAP MF_00641 SAAS SAAS006253

Pathway

Carbohydrate metabolism; glyoxylate cycle; (S)-malate from isocitrate: step 2/2. HAMAP MF_00641 SAAS SAAS006253

Subunit structure

Monomer By similarity. HAMAP MF_00641 SAAS SAAS006253

Subcellular location

Cytoplasm By similarity HAMAP MF_00641.

Sequence similarities

Belongs to the malate synthase family. GlcB subfamily. HAMAP MF_00641

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site3411Proton acceptor By similarity HAMAP MF_00641
Active site6431Proton donor By similarity HAMAP MF_00641

Sequences

Sequence LengthMass (Da)Tools
B1XYI1 [UniParc].

Last modified May 20, 2008. Version 1.
Checksum: 9EDD5B490F756261

FASTA73478,228
        10         20         30         40         50         60 
MNSRTPIHGL QVATELFRFI EGEVLPGTGV SSSEFWAGFD HIVADLAPKN AALLAERDRI 

        70         80         90        100        110        120 
QSAMDAWHSA NPGPITDMPA YRAHLEQIGY LVPVPANVQV TTANVDAELA LQAGPQLVVP 

       130        140        150        160        170        180 
IMNARYALNA ANARWGSLYD ALYGTDAISE ADGAERAGGY NPVRGAKVIA YARQVLDNAA 

       190        200        210        220        230        240 
PLVNASHVNA TGYAIEAGQL VVSMAGGVLT GLADPAQLVG YTGDAAAPKS VLLVHNGLHL 

       250        260        270        280        290        300 
DIQIDRSTTI GKSDAAGISD VVVESALSTI LDLEDSIAAV DAEDKVLAYR NWLGIQLGTL 

       310        320        330        340        350        360 
TEEVAKGGKT FTRRLNADRI YTAPDGSGEV KLHGRSLMFL RNVGHLMTNP AVLWGPEGRE 

       370        380        390        400        410        420 
IPEGILDAVV TTTIALHDLK RHGINGLSNS RTGSIYIVKP KMHGPAEVAF AAELFSRVEL 

       430        440        450        460        470        480 
LLGLPDSTVK LGIMDEERRT SVNLKACIAA ASSRVAFINT GFLDRTGDEM HTAMLAGPMM 

       490        500        510        520        530        540 
RKGDIKGSAW IAAYERRNVL IGLSCGLRGR AQIGKGMWAM PDLMAAMLEQ KIGHPKAGAN 

       550        560        570        580        590        600 
TAWVPSPTAA TLHALHYHQV SVAAVQQQIE QSGEAADPAI SETLLTNLLT IPVVAEAKWS 

       610        620        630        640        650        660 
ATERQQEIDN NAQGILGYVV RWVDQGVGCS KVPDINGVGL MEDRATLRIS SQHIANWLHH 

       670        680        690        700        710        720 
GVVTEAQVRE TFARMAAVVD GQNAGDPLYK AMAGNPDCAA YQAALDLVFK GKEQPSGYTE 

       730 
PLLHAWRLKV KAAA

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References

[1]"Complete sequence of Leptothrix cholodnii SP-6."
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Lykidis A., Emerson D., Richardson P.
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 51168 / LMG 8142 / SP-6.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001013 Genomic DNA. Translation: ACB36417.1.
RefSeqYP_001793182.1. NC_010524.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGB1XYI1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6162703.
GenomeReviewsGene locus Lcho_4166 in contig CP001013_GR.
KEGGlch:Lcho_4166.
PATRIC22398793. VBILepCho83238_4210.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG350005.
OMAENANWSV.
ProtClustDBPRK02999.

Family and domain databases

HAMAPMF_00641. Malate_synth_G.
[Tree]
InterProIPR011076. Malate_synth-like.
IPR023310. Malate_synth_G_beta_sub_dom.
IPR001465. Malate_synthase.
IPR006253. Malate_synthG.
[Graphical view]
Gene3DG3DSA:2.170.170.11. Malate_synth_G_beta_sub_dom. 2 hits.
KOK01638.
PANTHERPTHR21631:SF1. Malate_synthase. 1 hit.
PfamPF01274. Malate_synthase. 1 hit.
[Graphical view]
SUPFAMSSF51645. Malat_synth_like. 1 hit.
TIGRFAMsTIGR01345. Malate_syn_G. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB1XYI1_LEPCP
AccessionPrimary (citable) accession number: B1XYI1
Entry history
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: December 14, 2011
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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