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Protein

Biotin synthase

Gene

bioB

Organism
Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism.UniRule annotation

Catalytic activityi

Dethiobiotin + sulfur-(sulfur carrier) + 2 S-adenosyl-L-methionine + 2 reduced [2Fe-2S] ferredoxin = biotin + (sulfur carrier) + 2 L-methionine + 2 5'-deoxyadenosine + 2 oxidized [2Fe-2S] ferredoxin.UniRule annotation

Cofactori

Protein has several cofactor binding sites:
  • [4Fe-4S] clusterUniRule annotationNote: Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.UniRule annotation
  • [2Fe-2S] clusterUniRule annotationNote: Binds 1 [2Fe-2S] cluster. The cluster is coordinated with 3 cysteines and 1 arginine.UniRule annotation

Pathwayi: biotin biosynthesis

This protein is involved in step 2 of the subpathway that synthesizes biotin from 7,8-diaminononanoate.UniRule annotation
Proteins known to be involved in the 2 steps of the subpathway in this organism are:
  1. ATP-dependent dethiobiotin synthetase BioD (bioD)
  2. Biotin synthase (bioB)
This subpathway is part of the pathway biotin biosynthesis, which is itself part of Cofactor biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes biotin from 7,8-diaminononanoate, the pathway biotin biosynthesis and in Cofactor biosynthesis.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi91Iron-sulfur 1 (4Fe-4S-S-AdoMet)UniRule annotation1
Metal bindingi95Iron-sulfur 1 (4Fe-4S-S-AdoMet)UniRule annotation1
Metal bindingi98Iron-sulfur 1 (4Fe-4S-S-AdoMet)UniRule annotation1
Metal bindingi136Iron-sulfur 2 (2Fe-2S)UniRule annotation1
Metal bindingi173Iron-sulfur 2 (2Fe-2S)UniRule annotation1
Metal bindingi233Iron-sulfur 2 (2Fe-2S)UniRule annotation1
Metal bindingi303Iron-sulfur 2 (2Fe-2S)UniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionTransferase
Biological processBiotin biosynthesis
Ligand2Fe-2S, 4Fe-4S, Iron, Iron-sulfur, Metal-binding, S-adenosyl-L-methionine

Enzyme and pathway databases

UniPathwayiUPA00078; UER00162

Names & Taxonomyi

Protein namesi
Recommended name:
Biotin synthaseUniRule annotation (EC:2.8.1.6UniRule annotation)
Gene namesi
Name:bioBUniRule annotation
Ordered Locus Names:SYNPCC7002_A0309
OrganismiSynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum)
Taxonomic identifieri32049 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesSynechococcaceaeSynechococcus
Proteomesi
  • UP000001688 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003816751 – 367Biotin synthaseAdd BLAST367

Proteomic databases

PRIDEiB1XNE1

Interactioni

Subunit structurei

Homodimer.UniRule annotation

Protein-protein interaction databases

STRINGi32049.SYNPCC7002_A0309

Structurei

3D structure databases

ProteinModelPortaliB1XNE1
SMRiB1XNE1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the radical SAM superfamily. Biotin synthase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4107QSQ Bacteria
COG0502 LUCA
HOGENOMiHOG000239958
KOiK01012
OMAiADRFCMG
OrthoDBiPOG091H01DF

Family and domain databases

Gene3Di3.20.20.70, 1 hit
HAMAPiMF_01694 BioB, 1 hit
InterProiView protein in InterPro
IPR013785 Aldolase_TIM
IPR010722 BATS_dom
IPR034416 BATS_domain_containing
IPR002684 Biotin_synth/BioAB
IPR024177 Biotin_synthase
IPR006638 Elp3/MiaB/NifB
IPR007197 rSAM
PANTHERiPTHR22976 PTHR22976, 1 hit
PfamiView protein in Pfam
PF06968 BATS, 1 hit
PF04055 Radical_SAM, 1 hit
PIRSFiPIRSF001619 Biotin_synth, 1 hit
SFLDiSFLDG01060 BATS_domain_containing, 1 hit
SFLDG01278 biotin_synthase_like, 1 hit
SFLDS00029 Radical_SAM, 1 hit
SMARTiView protein in SMART
SM00876 BATS, 1 hit
SM00729 Elp3, 1 hit
TIGRFAMsiTIGR00433 bioB, 1 hit

Sequencei

Sequence statusi: Complete.

B1XNE1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVQVPIKPTP QTPAPTTAIP NGPALEAWLN DWAQRIINGD RLTRTEALRL
60 70 80 90 100
TAITGPENIL KLCAAADLIR HECCGNTVDL CSIVNVKSGS CSENCSFCSQ
110 120 130 140 150
SAHHPGEDSP VYGLKTAEEI IEQAKAAEAA GAKRFCLVSQ GRGIKYNSPR
160 170 180 190 200
DTEFEQILET VRRIQAETAI KPCCALGEVT PEQAQQLREA GVTRYNHNLE
210 220 230 240 250
ASENFFPDIV TTHSWQDRVE TIKNLKAAGI QACSGGIMGL GESWEDRVDL
260 270 280 290 300
AIALRDLEVE SVPLNLLNPR QGTPLGSNDR LDVYEALKCM AIFRFILPEQ
310 320 330 340 350
IIRYAGGREA VMGELQHLGL KAGINAMLIG HYLTTMGQPP EQDQAMLKSL
360
GLQGGEAPIP GQYSAAQ
Length:367
Mass (Da):39,869
Last modified:May 20, 2008 - v1
Checksum:i6B5760293D540FCC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000951 Genomic DNA Translation: ACA98319.1

Genome annotation databases

EnsemblBacteriaiACA98319; ACA98319; SYNPCC7002_A0309
KEGGisyp:SYNPCC7002_A0309

Similar proteinsi

Entry informationi

Entry nameiBIOB_SYNP2
AccessioniPrimary (citable) accession number: B1XNE1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: May 20, 2008
Last modified: May 23, 2018
This is version 60 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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