B1XJH3 (B1XJH3_SYNP2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Transcription antitermination protein nusG RuleBase RU000538

Gene names

Name:	nusG EMBL ACA99033.1
Ordered Locus Names:	SYNPCC7002_A1030

Organism

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum) [Complete proteome] [HAMAP]

Taxonomic identifier

32049 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length	200 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Influences transcription termination and antitermination. Acts as a component of the transcription complex, and interacts with the termination factor rho and RNA polymerase By similarity. SAAS SAAS006645 RuleBase RU000538
Sequence similarities	Belongs to the nusG family. RuleBase RU003559

Ontologies

Keywords
Biological process	Transcription Transcription antitermination SAAS SAAS006645 RuleBase RU000538 Transcription regulation Transcription termination SAAS SAAS006645 RuleBase RU000538
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	positive regulation of transcription elongation from RNA polymerase II promoter Inferred from electronic annotation. Source: InterPro transcription antitermination Inferred from electronic annotation. Source: UniProtKB-KW transcription termination, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1XJH3 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: D2E8222450913E61	FASTA	200	22,622
	10 20 30 40 50 60 MEHSEEYTGT QAGPKPRWYA VQVASGCEQR VKANLEQRIH TLDVADRIFQ VQIPQTPTVK 70 80 90 100 110 120 IRKDGSRQHG EEKVFPGYVL IQMTLDDEAW QVIKNTPHVI NFVGAEQKRS YGRGRGHVKP 130 140 150 160 170 180 VPLSKSEVER IFKQAQVVEP TVKVDMAIGD KILVLSGPFK DFEGEIIEVS PERSKLKALL 190 200 SIFGRDTPVE LEFTQVEKQS

References

[1]

"Complete sequence of Synechococcus sp. PCC 7002." Li T., Zhao J., Zhao C., Liu Z., Zhao F., Marquardt J., Nomura C.T., Persson S., Detter J.C., Richardson P.M., Lanz C., Schuster S.C., Wang J., Li S., Huang X., Cai T., Yu Z., Luo J., Zhao J., Bryant D.A. Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000951 Genomic DNA. Translation: ACA99033.1.
RefSeq	YP_001734289.1. NC_010475.1.
3D structure databases
ProteinModelPortal	B1XJH3.
ModBase	Search...
Protein-protein interaction databases
STRING	B1XJH3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6057649.
GenomeReviews	Gene locus SYNPCC7002_A1030 in contig CP000951_GR.
KEGG	syp:SYNPCC7002_A1030.
PATRIC	23816582. VBISynSp37135_1247.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG751162.
OMA	VASGCEK.
PhylomeDB	B1XJH3.
ProtClustDB	PRK05609.
Family and domain databases
InterPro	IPR005824. KOW. IPR001062. Transcrpt_antiterm_NusG. IPR015869. Transcrpt_antiterm_NusG_bac_CS. IPR006645. Transcrpt_antiterm_NusG_N. IPR014722. Transl_SH3-like_sub. IPR008991. Translation_prot_SH3-like. [Graphical view]
Gene3D	G3DSA:2.30.30.30. Ribosomal_L2. 1 hit. G3DSA:3.30.70.940. Transcrpt_antiterm_NusG_N. 1 hit.
KO	K02601.
Pfam	PF00467. KOW. 1 hit. PF02357. NusG. 1 hit. [Graphical view]
PRINTS	PR00338. NUSGTNSCPFCT.
SMART	SM00739. KOW. 1 hit. SM00738. NGN. 1 hit. [Graphical view]
SUPFAM	SSF82679. Transcrpt_antiterm_NusG_N. 1 hit. SSF50104. Transl_SH3_like. 1 hit.
TIGRFAMs	TIGR00922. NusG. 1 hit.
PROSITE	PS01014. NUSG. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1XJH3_SYNP2

Accession

Primary (citable) accession number: B1XJH3

Entry history

Integrated into UniProtKB/TrEMBL:	May 20, 2008
Last sequence update:	May 20, 2008
Last modified:	December 14, 2011
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)