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B1XGB5 (B1XGB5_ECODH) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:allD EMBL ACB01642.1
Ordered Locus Names:ECDH10B_0473 EMBL ACB01642.1
OrganismEscherichia coli (strain K12 / DH10B) [Complete proteome] [HAMAP] EMBL ACB01642.1
Taxonomic identifier316385 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length349 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding116 – 1183NAD PDB 4FJU
Nucleotide binding174 – 1763NAD PDB 4FJU
Nucleotide binding306 – 3083NAD PDB 4FJU

Sites

Binding site441NAD PDB 4FJU
Binding site1401NAD PDB 4FJU
Binding site1581NAD PDB 4FJU
Binding site2241NAD PDB 4FJU

Sequences

Sequence LengthMass (Da)Tools
B1XGB5 [UniParc].

Last modified May 20, 2008. Version 1.
Checksum: 93C3076A66141C4E

FASTA34937,967
        10         20         30         40         50         60 
MKISRETLHQ LIENKLCQAG LKREHAATVA EVLVYADARG IHSHGAVRVE YYAERISKGG 

        70         80         90        100        110        120 
TNREPEFRLE ETGPCSAILH ADNAAGQVAA KMGMEHAIKT AQQNGVAVVG ISRMGHSGAI 

       130        140        150        160        170        180 
SYFVQQAARA GFIGISMCQS DPMVVPFGGA EIYYGTNPLA FAAPGEGDEI LTFDMATTVQ 

       190        200        210        220        230        240 
AWGKVLDARS RNMSIPDTWA VDKNGVPTTD PFAVHALLPA AGPKGYGLMM MIDVLSGVLL 

       250        260        270        280        290        300 
GLPFGRQVSS MYDDLHAGRN LGQLHIVINP NFFSSSELFR QHLSQTMREL NAITPAPGFN 

       310        320        330        340 
QVYYPGQDQD IKQRKAAVEG IEIVDDIYQY LISDALYNTS YETKNPFAQ 

« Hide

References

« Hide 'large scale' references
[1]"The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse."
Durfee T., Nelson R., Baldwin S., Plunkett G.III., Burland V., Mau B., Petrosino J.F., Qin X., Muzny D.M., Ayele M., Gibbs R.A., Csorgo B., Posfai G., Weinstock G.M., Blattner F.R.
J. Bacteriol. 190:2597-2606(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / DH10B.
[2]"Structural and functional insights into (S)-ureidoglycolate dehydrogenase, a metabolic branch point enzyme in nitrogen utilization."
Kim M.I., Shin I., Cho S., Lee J., Rhee S.
PLoS ONE 7:e52066-e52066(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.77 ANGSTROMS) IN COMPLEX WITH NAD.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000948 Genomic DNA. Translation: ACB01642.1.
RefSeqYP_001729420.1. NC_010473.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4FJSX-ray2.13A/B1-349[»]
4FJUX-ray1.77A/B1-349[»]
ProteinModelPortalB1XGB5.
SMRB1XGB5. Positions 1-337.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316385.ECDH10B_0473.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACB01642; ACB01642; ECDH10B_0473.
GeneID6059947.
KEGGecd:ECDH10B_0473.
PATRIC18460722. VBIEscCol59506_0479.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2055.
HOGENOMHOG000173270.
KOK00073.
OMAQYLYERV.
OrthoDBEOG6ZPSZJ.
ProtClustDBPRK15025.

Enzyme and pathway databases

BioCycECOL316385:GJ8B-463-MONOMER.

Family and domain databases

InterProIPR003767. Malate/L-lactate_DH.
IPR017590. Ureidoglycolate_dehydrogenase.
[Graphical view]
PANTHERPTHR11091. PTHR11091. 1 hit.
PfamPF02615. Ldh_2. 1 hit.
[Graphical view]
SUPFAMSSF89733. SSF89733. 1 hit.
TIGRFAMsTIGR03175. AllD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB1XGB5_ECODH
AccessionPrimary (citable) accession number: B1XGB5
Entry history
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: April 16, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)