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B1WRQ3 (B1WRQ3_CYAA5) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Diaminopimelate epimerase HAMAP MF_00197
Short name=DAP epimerase HAMAP MF_00197
EC=5.1.1.7 HAMAP MF_00197
Gene names
Name:dapF HAMAP MF_00197 EMBL ACB53494.1
Ordered Locus Names:cce_4146
OrganismCyanothece sp. (strain ATCC 51142) [Complete proteome] [HAMAP]
Taxonomic identifier43989 [NCBI]
Taxonomic lineageBacteria › Cyanobacteria › Chroococcales › Cyanothece

Protein attributes

Sequence length290 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate. HAMAP MF_00197 SAAS SAAS018510

Pathway

Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1. HAMAP MF_00197 SAAS SAAS018510

Subcellular location

Cytoplasm By similarity HAMAP MF_00197 SAAS SAAS018510.

Sequence similarities

Belongs to the diaminopimelate epimerase family. HAMAP MF_00197

Ontologies

Keywords
   Biological processAmino-acid biosynthesis
Lysine biosynthesis HAMAP MF_00197 SAAS SAAS018510
   Cellular componentCytoplasm HAMAP MF_00197 SAAS SAAS018510
   Molecular functionIsomerase HAMAP MF_00197 SAAS SAAS018510
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processlysine biosynthetic process via diaminopimelate

Inferred from electronic annotation. Source: HAMAP

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functiondiaminopimelate epimerase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site851 By similarity HAMAP MF_00197
Active site2341 By similarity HAMAP MF_00197

Sequences

Sequence LengthMass (Da)Tools
B1WRQ3 [UniParc].

Last modified May 20, 2008. Version 1.
Checksum: 156BB480D2CBAA21

FASTA29031,720
        10         20         30         40         50         60 
MIIVYITLIE LIMEFTKYQG LGNDFILVDN RHSSTPLLSP DEAVKLCDRH FGIGADGVIF 

        70         80         90        100        110        120 
ALPGDDQSDY TMRIFNSDGS EPQMCGNGIR CLARFLAKLE GVETVGKSYR IQTLAGIIIP 

       130        140        150        160        170        180 
RLEEEGQVKV DMGNPFLLAK EIPTTLTKGE EKVINQFLEV GGQSWSVTCV SMGNPHCITF 

       190        200        210        220        230        240 
VENVATIPLE TIGPMFEHHS VFPERTNTEF IEVVRSDYLK MRVWERGAGI TLACGTGACA 

       250        260        270        280        290 
SVVAGVLTGN CDRLCTVELP GGCLTIEWSE QDNRLYMTGP AEAVFTGVIG

« Hide

References

[1]"The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle."
Welsh E.A., Liberton M., Stoeckel J., Loh T., Elvitigala T., Wang C., Wollam A., Fulton R.S., Clifton S.W., Jacobs J.M., Aurora R., Ghosh B.K., Sherman L.A., Smith R.D., Wilson R.K., Pakrasi H.B.
Proc. Natl. Acad. Sci. U.S.A. 105:15094-15099(2008) [PubMed: 18812508] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000806 Genomic DNA. Translation: ACB53494.1.
RefSeqYP_001805560.1. NC_010546.1.

3D structure databases

ProteinModelPortalB1WRQ3.
ModBaseSearch...

Protein-protein interaction databases

STRINGB1WRQ3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6171222.
GenomeReviewsGene locus cce_4146 in contig CP000806_GR.
KEGGcyt:cce_4146.
PATRIC21546644. VBICyaSp130209_4127.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG399442.
OMAFMTGPAT.
PhylomeDBB1WRQ3.
ProtClustDBPRK00450.

Family and domain databases

HAMAPMF_00197. DAP_epimerase.
[Tree]
InterProIPR018510. DAP_epimerase_AS.
IPR001653. DAP_epimerase_DapF.
[Graphical view]
KOK01778.
PfamPF01678. DAP_epimerase. 2 hits.
[Graphical view]
TIGRFAMsTIGR00652. DapF. 1 hit.
PROSITEPS01326. DAP_EPIMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB1WRQ3_CYAA5
AccessionPrimary (citable) accession number: B1WRQ3
Entry history
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: December 14, 2011
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info