Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

16S rRNA (cytosine(967)-C(5))-methyltransferase

Gene

cce_0540

Organism
Cyanothece sp. (strain ATCC 51142)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.SAAS annotation

Catalytic activityi

S-adenosyl-L-methionine + cytosine(967) in 16S rRNA = S-adenosyl-L-homocysteine + 5-methylcytosine(967) in 16S rRNA.SAAS annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei293S-adenosyl-L-methioninePROSITE-ProRule annotation1
Binding sitei320S-adenosyl-L-methioninePROSITE-ProRule annotation1
Binding sitei337S-adenosyl-L-methioninePROSITE-ProRule annotation1
Active sitei390NucleophilePROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionMethyltransferasePROSITE-ProRule annotationSAAS annotationImported, RNA-bindingPROSITE-ProRule annotationSAAS annotation, Transferase
Biological processrRNA processingSAAS annotation
LigandS-adenosyl-L-methioninePROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
16S rRNA (cytosine(967)-C(5))-methyltransferaseSAAS annotation (EC:2.1.1.176SAAS annotation)
Gene namesi
Ordered Locus Names:cce_0540Imported
OrganismiCyanothece sp. (strain ATCC 51142)Imported
Taxonomic identifieri43989 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeOscillatorialesCyanothecaceaeCyanothece
Proteomesi
  • UP000001203 Componenti: Chromosome circular

Subcellular locationi

  • Cytoplasm SAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi43989.cce_0540.

Structurei

3D structure databases

ProteinModelPortaliB1WPA9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini178 – 452SAM_MT_RSMB_NOPInterPro annotationAdd BLAST275

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.PROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037300.
KOiK03500.
OMAiHIGLYQL.
OrthoDBiPOG091H02E2.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiView protein in InterPro
IPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
PfamiView protein in Pfam
PF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiView protein in PROSITE
PS51686. SAM_MT_RSMB_NOP. 1 hit.

Sequencei

Sequence statusi: Complete.

B1WPA9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQPTTKKTNA RQLTLDILRQ IDRKNSYTDI ALDRAFNQTH LNPSDRSLCT
60 70 80 90 100
ELVYGIIRHQ RTLDTLIDQL GKKKAKQQPP DLRRILHIGL YQLRYLDNIP
110 120 130 140 150
PSAAVNTSVN LAKEYKLNRL SGVVNGILRQ YLRSSETDGD PLILPPNPIE
160 170 180 190 200
KIAIQYSFPD WMIETWVQQW GEATTEQLCH WFNQTPTIDI RINPLKTTLE
210 220 230 240 250
TLQTQLTEAG INATPFPPLP CTLRLQGKIG SIQTLPGFHQ GHWTIQDSSA
260 270 280 290 300
QLVSYLLDPQ PGETIIDACA APGGKTTHMA ELMGDQGTII ACDRTPSRLK
310 320 330 340 350
KVQQNAQRLQ LNSIQTILGD SRHLPQLINT ADRVLVDVPC SGLGTLHRHP
360 370 380 390 400
DIRWRQTPEK IQELSRLQQE ILTQAAQWVK PQGTLVYATC TLNPTENQQI
410 420 430 440 450
IESFLTHHPQ WNLKPPSVHW LFSPFMTSSK WIQILPHEHH TDGFFMVKLK

KG
Length:452
Mass (Da):51,357
Last modified:May 20, 2008 - v1
Checksum:iDE0C8C9C87EF75AF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000806 Genomic DNA. Translation: ACB49891.1.
RefSeqiWP_009546622.1. NC_010546.1.

Genome annotation databases

EnsemblBacteriaiACB49891; ACB49891; cce_0540.
KEGGicyt:cce_0540.
PATRICi21539550. VBICyaSp130209_0621.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000806 Genomic DNA. Translation: ACB49891.1.
RefSeqiWP_009546622.1. NC_010546.1.

3D structure databases

ProteinModelPortaliB1WPA9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi43989.cce_0540.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACB49891; ACB49891; cce_0540.
KEGGicyt:cce_0540.
PATRICi21539550. VBICyaSp130209_0621.

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037300.
KOiK03500.
OMAiHIGLYQL.
OrthoDBiPOG091H02E2.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiView protein in InterPro
IPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
PfamiView protein in Pfam
PF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiView protein in PROSITE
PS51686. SAM_MT_RSMB_NOP. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiB1WPA9_CYAA5
AccessioniPrimary (citable) accession number: B1WPA9
Entry historyiIntegrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: February 15, 2017
This is version 68 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.