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Protein

DNA-directed RNA polymerase subunit gamma

Gene

rpoC1

Organism
Cyanothece sp. (strain ATCC 51142)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciCSP43989:GKC8-3888-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit gammaUniRule annotation (EC:2.7.7.6UniRule annotation)
Short name:
RNAP subunit gammaUniRule annotation
Alternative name(s):
RNA polymerase subunit gammaUniRule annotation
Transcriptase subunit gammaUniRule annotation
Gene namesi
Name:rpoC1UniRule annotation
Ordered Locus Names:cce_3838
OrganismiCyanothece sp. (strain ATCC 51142)
Taxonomic identifieri43989 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesCyanothece
Proteomesi
  • UP000001203 Componenti: Chromosome circular

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 628628DNA-directed RNA polymerase subunit gammaPRO_1000165858Add
BLAST

Proteomic databases

PRIDEiB1WP07.

Interactioni

Subunit structurei

In cyanobacteria the RNAP catalytic core is composed of 2 alpha, 1 beta, 1 beta', 1 gamma and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

Protein-protein interaction databases

STRINGi43989.cce_3838.

Family & Domainsi

Sequence similaritiesi

Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105D27. Bacteria.
COG0086. LUCA.
HOGENOMiHOG000054284.
KOiK03046.
OMAiHRMGYIK.
OrthoDBiPOG091H02K5.

Family and domain databases

HAMAPiMF_01323. RNApol_bact_RpoC1. 1 hit.
InterProiIPR012755. DNA-dir_RpoC1_gamma.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 2 hits.
PF04983. RNA_pol_Rpb1_3. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02387. rpoC1_cyan. 1 hit.

Sequencei

Sequence statusi: Complete.

B1WP07-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKPAQDTRFD YVKIGLASPE RVRQWGERTL PNGVVVGEVT KPETINYRTL
60 70 80 90 100
KPEMDGLFCE RIFGPSKDWE CWCGKYKRVR HRGIVCERCG VEVTESRVRR
110 120 130 140 150
HRMGYIKLAA PVTHVWYLKG IPSYMSILLD MALRDVEQIV YFNAYVVLDP
160 170 180 190 200
GNASNLSYKQ LLTEDQWIEI EDQIYAEDSD LYGIEVGIGA EAIQRLLQEM
210 220 230 240 250
NLEEIAEILR EEIAQSKGQK RAKLIKRLRV IDNFIATGSL PAWMVLDVIP
260 270 280 290 300
VIPPDLRPMV QLDGGRFATS DLNDLYRRVI NRNNRLARLQ EILAPEIIVR
310 320 330 340 350
NEKRMLQEAV DALIDNGRRG RTVVGANNRP LKSLSDIIEG KQGRFRQNLL
360 370 380 390 400
GKRVDYSGRS VIVVGPKLKI YQCGLPREMA IELFQPFVIH RLIRLGLVNN
410 420 430 440 450
IKAAKKLIIK GDPSVWNVLE EVITGHPVLL NRAPTLHRLG IQAFEPILVE
460 470 480 490 500
GRAIQLHPLV CPAFNADFDG DQMAVHVPLS LESQAEARLL MLACHNILSP
510 520 530 540 550
ATGKPIVAPS QDMVLGCYYL TAENPQSQKG NGRYFGNIDD AVKAFEHGLV
560 570 580 590 600
DLHAYVWLRS EDPNEEVVTD LPDTEVLKTE TLEDGSVIKH YRERRVREID
610 620
GEAVSQFIRT TPGRIIYNKT IQDALTVA
Length:628
Mass (Da):71,159
Last modified:May 20, 2008 - v1
Checksum:i2091DCF71D65F823
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000806 Genomic DNA. Translation: ACB53186.1.
RefSeqiWP_009547177.1. NC_010546.1.

Genome annotation databases

EnsemblBacteriaiACB53186; ACB53186; cce_3838.
KEGGicyt:cce_3838.
PATRICi21546060. VBICyaSp130209_3839.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000806 Genomic DNA. Translation: ACB53186.1.
RefSeqiWP_009547177.1. NC_010546.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi43989.cce_3838.

Proteomic databases

PRIDEiB1WP07.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACB53186; ACB53186; cce_3838.
KEGGicyt:cce_3838.
PATRICi21546060. VBICyaSp130209_3839.

Phylogenomic databases

eggNOGiENOG4105D27. Bacteria.
COG0086. LUCA.
HOGENOMiHOG000054284.
KOiK03046.
OMAiHRMGYIK.
OrthoDBiPOG091H02K5.

Enzyme and pathway databases

BioCyciCSP43989:GKC8-3888-MONOMER.

Family and domain databases

HAMAPiMF_01323. RNApol_bact_RpoC1. 1 hit.
InterProiIPR012755. DNA-dir_RpoC1_gamma.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 2 hits.
PF04983. RNA_pol_Rpb1_3. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02387. rpoC1_cyan. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRPOC1_CYAA5
AccessioniPrimary (citable) accession number: B1WP07
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: May 20, 2008
Last modified: September 7, 2016
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.