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B1WC34

- B1WC34_RAT

UniProt

B1WC34 - B1WC34_RAT

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Protein
Submitted name:

Protein Prkcsh

Gene
Prkcsh, Prkcsh_predicted, rCG_31596
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. calcium ion binding Source: InterPro
  2. kinase activity Source: UniProtKB-KW
  3. RNA binding Source: Ensembl

GO - Biological processi

  1. in utero embryonic development Source: Ensembl
  2. liver development Source: Ensembl
  3. negative regulation of neuron projection development Source: Ensembl
  4. N-glycan processing Source: InterPro
  5. nitrogen compound metabolic process Source: Ensembl
  6. protein heterooligomerization Source: RGD
  7. renal system development Source: Ensembl
Complete GO annotation...

Keywords - Molecular functioni

KinaseImported, Transferase

Keywords - Ligandi

CalciumUniRule annotation

Enzyme and pathway databases

ReactomeiREACT_196231. Advanced glycosylation endproduct receptor signaling.
REACT_196411. N-glycan trimming in the ER and Calnexin/Calreticulin cycle.
REACT_196415. Calnexin/calreticulin cycle.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein PrkcshImported
Submitted name:
Protein kinase C substrate 80K-HImported
Submitted name:
Protein kinase C substrate 80K-H (Predicted), isoform CRA_bImported
Gene namesi
Name:PrkcshImported
Synonyms:Prkcsh_predictedImported
ORF Names:rCG_31596Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 8

Organism-specific databases

RGDi1309628. Prkcsh.

Subcellular locationi

GO - Cellular componenti

  1. plasma membrane Source: Reactome
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriB1WC34.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000018009.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG289998.
GeneTreeiENSGT00510000047770.
HOGENOMiHOG000007805.
HOVERGENiHBG051738.
KOiK08288.
OMAiDHKEQID.
OrthoDBiEOG7DZ8JX.
TreeFamiTF329550.

Family and domain databases

Gene3Di2.70.130.10. 2 hits.
4.10.400.10. 1 hit.
InterProiIPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
IPR026874. Glucosidase_2_bsu.
IPR002172. LDrepeatLR_classA_rpt.
IPR009011. Man6P_isomerase_rcpt-bd_dom.
IPR028146. PRKCSH_N.
[Graphical view]
PANTHERiPTHR12630:SF1. PTHR12630:SF1. 1 hit.
PfamiPF13202. EF-hand_5. 2 hits.
PF12999. PRKCSH-like. 1 hit.
[Graphical view]
SMARTiSM00192. LDLa. 1 hit.
[Graphical view]
SUPFAMiSSF50911. SSF50911. 1 hit.
PROSITEiPS00018. EF_HAND_1. 1 hit.
PS50222. EF_HAND_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1WC34-1 [UniParc]FASTAAdd to Basket

« Hide

MLLLLLLLPL CWAVEVKRPR GVSLSNHHFY DESKPFTCLD GTATIPFDQV    50
NDDYCDCKDG SDEPGTAACP NGSFHCTNTG YKPLYILSSR VNDGVCDCCD 100
GTDEYNSGTV CENTCREKGR KEKESLQQLA EVTREGFRLK KILIEEWKTA 150
REEKQSKLLE LQAGKKSLED QVETLRTAKE EAERPEKEAK DQHRKLWEEQ 200
QAAAKARREQ ELAASAFQEL DDNMDGLVSL AELQTHPELD TDGDGGLSEE 250
EAQALLSGDT QTDTTSFYDR VWAAIRDKYR SEVPPTDIPV PEVTEPKEEK 300
LPVLPPMEEE EEEEEPEEEE EEEEEEVPGE QPKEVPPPQQ PLRPPSPAED 350
EKMPPYDEET QAIIDAAQEA RNKFEEVERS LKEMEESIRS LEQEISFDFG 400
PSGEFAYLYS QCYELTTNEY VYRLCPFKLV SQKPKHGGSP TSLGTWGSWA 450
GPDDDKFSAM KYEQGTGCWQ GPNRSTTVRL LCGKETVVTS TTEPSRCEYL 500
MELMTPAACP EPPPEVPTDG DHDEL 525
Length:525
Mass (Da):59,218
Last modified:May 20, 2008 - v1
Checksum:iC9C1089E36012BE8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06053688 Genomic DNA. No translation available.
BC161987 mRNA. Translation: AAI61987.1.
CH473993 Genomic DNA. Translation: EDL78243.1.
RefSeqiNP_001100276.1. NM_001106806.2.
XP_006242695.1. XM_006242633.1.
UniGeneiRn.104417.

Genome annotation databases

EnsembliENSRNOT00000018009; ENSRNOP00000018009; ENSRNOG00000013360.
GeneIDi300445.
KEGGirno:300445.
UCSCiRGD:1309628. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06053688 Genomic DNA. No translation available.
BC161987 mRNA. Translation: AAI61987.1 .
CH473993 Genomic DNA. Translation: EDL78243.1 .
RefSeqi NP_001100276.1. NM_001106806.2.
XP_006242695.1. XM_006242633.1.
UniGenei Rn.104417.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10116.ENSRNOP00000018009.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000018009 ; ENSRNOP00000018009 ; ENSRNOG00000013360 .
GeneIDi 300445.
KEGGi rno:300445.
UCSCi RGD:1309628. rat.

Organism-specific databases

CTDi 5589.
RGDi 1309628. Prkcsh.

Phylogenomic databases

eggNOGi NOG289998.
GeneTreei ENSGT00510000047770.
HOGENOMi HOG000007805.
HOVERGENi HBG051738.
KOi K08288.
OMAi DHKEQID.
OrthoDBi EOG7DZ8JX.
TreeFami TF329550.

Enzyme and pathway databases

Reactomei REACT_196231. Advanced glycosylation endproduct receptor signaling.
REACT_196411. N-glycan trimming in the ER and Calnexin/Calreticulin cycle.
REACT_196415. Calnexin/calreticulin cycle.

Miscellaneous databases

NextBioi 646903.
PROi B1WC34.

Gene expression databases

Genevestigatori B1WC34.

Family and domain databases

Gene3Di 2.70.130.10. 2 hits.
4.10.400.10. 1 hit.
InterProi IPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
IPR026874. Glucosidase_2_bsu.
IPR002172. LDrepeatLR_classA_rpt.
IPR009011. Man6P_isomerase_rcpt-bd_dom.
IPR028146. PRKCSH_N.
[Graphical view ]
PANTHERi PTHR12630:SF1. PTHR12630:SF1. 1 hit.
Pfami PF13202. EF-hand_5. 2 hits.
PF12999. PRKCSH-like. 1 hit.
[Graphical view ]
SMARTi SM00192. LDLa. 1 hit.
[Graphical view ]
SUPFAMi SSF50911. SSF50911. 1 hit.
PROSITEi PS00018. EF_HAND_1. 1 hit.
PS50222. EF_HAND_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: LungImported.
  2. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  5. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiB1WC34_RAT
AccessioniPrimary (citable) accession number: B1WC34
Entry historyi
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: September 3, 2014
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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