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Protein
Submitted name:

Podocalyxin-like 2

Gene

Podxl2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-RNO-156584 Cytosolic sulfonation of small molecules

Names & Taxonomyi

Protein namesi
Submitted name:
Podocalyxin-like 2Imported
Submitted name:
Podocalyxin-like 2 (Predicted)Imported
Gene namesi
Name:Podxl2Imported
Synonyms:Podxl2_predictedImported
ORF Names:rCG_56509Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 4

Organism-specific databases

RGDi1305815 Podxl2

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei497 – 521HelicalSequence analysisAdd BLAST25

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 28Sequence analysisAdd BLAST28
ChainiPRO_501429826229 – 603Sequence analysisAdd BLAST575

Expressioni

Gene expression databases

BgeeiENSRNOG00000016255

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000021826

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili152 – 188Sequence analysisAdd BLAST37

Keywords - Domaini

Coiled coilSequence analysis, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IFKB Eukaryota
ENOG410YCG4 LUCA
GeneTreeiENSGT00730000111323
HOGENOMiHOG000054210
HOVERGENiHBG082114
KOiK06818
OMAiIPWDSTQ
OrthoDBiEOG091G04AY
TreeFamiTF333564

Family and domain databases

InterProiView protein in InterPro
IPR013836 CD34/Podocalyxin
PfamiView protein in Pfam
PF06365 CD34_antigen, 1 hit

Sequencei

Sequence statusi: Complete.

B1WC18-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARPLRAAGL PPPLLLLLAA GVSLGACAVT MDEPGPEGLT STSLLDLLLP
60 70 80 90 100
TDFEPLDSEE PSEAMGLGAG LAPGSGFPSE DSEESRLLQP PQYFWEEEEL
110 120 130 140 150
NGSSLDLGPT ADYVFPDLTE KVASMEDPGQ APDLPNLPSI LPKMDLAEPP
160 170 180 190 200
WHMPLEEEEE EEEEEEEEER EEEEREKEEA EEEEEEELLP VSGSPGATTQ
210 220 230 240 250
AHAPSPSTSS TSSQSPGATR HRQDDSGDQA TSGIEVESSV KPTLSVPSVT
260 270 280 290 300
PSTVALGVQN YSQESGGTEW PTGGLGVQSE VPQGAGEEAT VGAADYDGQQ
310 320 330 340 350
GALPSTSLPQ TVPPSGTEVP GEGPLYPRTP DSFPPGPQDT ESTPSSATWG
360 370 380 390 400
QEGLSEQPLE GQTAEAHSLT PWDSTQVICK DWSNLAGKSY VILNMTENID
410 420 430 440 450
CEVFRRHRGL RLLALVEEVL PRHRSGHRGD WHISLSKPSE KEQHLLMTLV
460 470 480 490 500
GEQGVVPTQD VLSMLSGIRR SLEEIGIQNY STTSSCQARA TQVRSDYGTL
510 520 530 540 550
FVVLVIIGVI CFIIIVLGLL YNCWQRRLPK LKHVSHGEEL RFVENGCHDN
560 570 580 590 600
PTLDVASDSQ SEMQEKQPSL NGGAINGPSS WSALMGSKRD PEDSDVFEED

THL
Length:603
Mass (Da):65,010
Last modified:May 20, 2008 - v1
Checksum:i76D7C8EFB9B251B5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC120997 Genomic DNA No translation available.
BC161970 mRNA Translation: AAI61970.1
CH473957 Genomic DNA Translation: EDL91320.1
RefSeqiNP_001100077.1, NM_001106607.1
UniGeneiRn.100042

Genome annotation databases

EnsembliENSRNOT00000021826; ENSRNOP00000021826; ENSRNOG00000016255
GeneIDi297433
KEGGirno:297433

Similar proteinsi

Entry informationi

Entry nameiB1WC18_RAT
AccessioniPrimary (citable) accession number: B1WC18
Entry historyiIntegrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: April 25, 2018
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health