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B1VYY2 (B1VYY2_STRGG) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribonuclease 3 HAMAP MF_00104
EC=3.1.26.3 HAMAP MF_00104
Alternative name(s):
Ribonuclease III HAMAP MF_00104
Gene names
Name:rnc HAMAP MF_00104
Ordered Locus Names:SGR_1908
OrganismStreptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) [Complete proteome] [HAMAP]
Taxonomic identifier455632 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Streptomycineae › Streptomycetaceae › Streptomyces

Protein attributes

Sequence length274 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Digests double-stranded RNA. Involved in the processing of ribosomal RNA precursors and of some mRNAs By similarity. HAMAP MF_00104 SAAS SAAS011907

Catalytic activity

Endonucleolytic cleavage to 5'-phosphomonoester. HAMAP MF_00104 SAAS SAAS011907

Subcellular location

Cytoplasm By similarity HAMAP MF_00104 SAAS SAAS011907.

Sequence similarities

Contains 1 DRBM (double-stranded RNA-binding) domain. HAMAP MF_00104 SAAS SAAS011907

Contains 1 RNase III domain. HAMAP MF_00104 SAAS SAAS011907

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain20 – 146127RNase III By similarity HAMAP MF_00104
Domain173 – 24169DRBM By similarity HAMAP MF_00104

Sequences

Sequence LengthMass (Da)Tools
B1VYY2 [UniParc].

Last modified May 20, 2008. Version 1.
Checksum: C8965E34638638FF

FASTA27428,751
        10         20         30         40         50         60 
MSELSSAKKQ ADNVNTASSH TLLEGRLGYH LESALLVRAL THRSYAYENG GLPTNERLEF 

        70         80         90        100        110        120 
LGDSVLGLVV TDTLYRTHPD LPEGQLAKLR AAVVNSRALA EVGRGLELGS FIRLGRGEEG 

       130        140        150        160        170        180 
TGGRDKASIL ADTLEAVIGA VYLDQGLSAA SELVHRLFDP LIDRSSNLGA GLDWKTSLQE 

       190        200        210        220        230        240 
LTASESLGVP EYLVTETGPD HEKTFTAAAR VGGVSYGTGT GRSKKEAEQQ AAESAWREIS 

       250        260        270 
AAAEARQAAE KSAADGGAAD TPADPSPHTD AAPA

« Hide

References

[1]"Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350."
Ohnishi Y., Ishikawa J., Hara H., Suzuki H., Ikenoya M., Ikeda H., Yamashita A., Hattori M., Horinouchi S.
J. Bacteriol. 190:4050-4060(2008) [PubMed: 18375553] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP009493 Genomic DNA. Translation: BAG18737.1.
RefSeqYP_001823420.1. NC_010572.1.

3D structure databases

ProteinModelPortalB1VYY2.
SMRB1VYY2. Positions 27-163.
ModBaseSearch...

Protein-protein interaction databases

STRINGB1VYY2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6215842.
GenomeReviewsGene locus SGR_1908 in contig AP009493_GR.
KEGGsgr:SGR_1908.
PATRIC23750265. VBIStrGri32265_1937.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG744556.
OMATHRSHSK.
ProtClustDBPRK00102.

Family and domain databases

HAMAPMF_00104. RNase_III.
[Tree]
InterProIPR001159. Ds-RNA-bd.
IPR014720. dsRNA-bd-like.
IPR000999. RNase_III.
IPR011907. RNase_III_bac.
[Graphical view]
Gene3DG3DSA:3.30.160.20. dsRNA-bd-like. 1 hit.
G3DSA:1.10.1520.10. RNase_III. 1 hit.
KOK03685.
PANTHERPTHR11207. PTHR11207. 1 hit.
PfamPF00035. dsrm. 1 hit.
PF00636. Ribonuclease_3. 1 hit.
[Graphical view]
SMARTSM00358. DSRM. 1 hit.
SM00535. RIBOc. 1 hit.
[Graphical view]
SUPFAMSSF69065. RNase_III. 1 hit.
TIGRFAMsTIGR02191. RNaseIII. 1 hit.
PROSITEPS50137. DS_RBD. 1 hit.
PS00517. RNASE_3_1. 1 hit.
PS50142. RNASE_3_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB1VYY2_STRGG
AccessionPrimary (citable) accession number: B1VYY2
Entry history
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: December 14, 2011
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info