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B1VYW1 (RIMM_STRGG) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribosome maturation factor rimM
Gene names
Name:rimM
Ordered Locus Names:SGR_1887
OrganismStreptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) [Complete proteome] [HAMAP]
Taxonomic identifier455632 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Streptomycineae › Streptomycetaceae › Streptomyces

Protein attributes

Sequence length198 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP MF_00014

Subunit structure

Binds ribosomal protein S19 By similarity. HAMAP MF_00014

Subcellular location

Cytoplasm By similarity HAMAP MF_00014.

Domain

The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP MF_00014

Sequence similarities

Belongs to the rimM family.

Contains 1 PRC barrel domain.

Ontologies

Keywords
   Biological processRibosome biogenesis
   Cellular componentCytoplasm
   Molecular functionChaperone
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processrRNA processing

Inferred from electronic annotation. Source: InterPro

   Cellular componentribosome

Inferred from electronic annotation. Source: InterPro

   Molecular functionribosome binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 198198Ribosome maturation factor rimM HAMAP MF_00014
PRO_1000089522

Regions

Domain92 – 16675PRC barrel

Sequences

Sequence LengthMass (Da)Tools
B1VYW1 [UniParc].

Last modified May 20, 2008. Version 1.
Checksum: 34A2B44CE0208A7E

FASTA19821,291
        10         20         30         40         50         60 
MQLVVARIGR AHGIKGEVTV EVRTDEPELR LGPGAVLATE PAATGPLTVE AGRVHSGRLL 

        70         80         90        100        110        120 
LRFEGVRDRT GAEALRNTLL IAEVDPDELP EEEDEFYDHQ LIDLDVVLAD GTGIGRITEI 

       130        140        150        160        170        180 
SHLPSQDLFI VERPDGSEVM IPFVEEIVTE IDLEEQRAVI TPPPGLIDES EAVVASSRDE 

       190 
ETGEAASGDE AEAPKGDA

« Hide

References

[1]"Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350."
Ohnishi Y., Ishikawa J., Hara H., Suzuki H., Ikenoya M., Ikeda H., Yamashita A., Hattori M., Horinouchi S.
J. Bacteriol. 190:4050-4060(2008) [PubMed: 18375553] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JCM 4626 / NBRC 13350.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP009493 Genomic DNA. Translation: BAG18716.1.
RefSeqYP_001823399.1. NC_010572.1.

3D structure databases

ProteinModelPortalB1VYW1.
ModBaseSearch...

Protein-protein interaction databases

STRINGB1VYW1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6211859.
GenomeReviewsGene locus SGR_1887 in contig AP009493_GR.
KEGGsgr:SGR_1887.
PATRIC23750223. VBIStrGri32265_1916.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG703775.
OMAPDEFYDH.
ProtClustDBPRK00122.

Family and domain databases

HAMAPMF_00014. Ribosome_mat_RimM.
[Tree]
InterProIPR011961. 16S_RimM.
IPR007903. PRC_barrel.
IPR011033. PRC_barrell-like.
IPR002676. RimM.
IPR009000. Transl_elong_init/rib_B-barrel.
[Graphical view]
Gene3DG3DSA:2.40.30.60. G3DSA:2.40.30.60. 1 hit.
KOK02860.
PfamPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMSSF50346. PRCH_cytoplasmic. 1 hit.
SSF50447. Translat_factor. 1 hit.
TIGRFAMsTIGR02273. 16S_RimM. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRIMM_STRGG
AccessionPrimary (citable) accession number: B1VYW1
Entry history
Integrated into UniProtKB/Swiss-Prot: March 24, 2009
Last sequence update: May 20, 2008
Last modified: January 25, 2012
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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