B1VH07 (B1VH07_CORU7) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003887
EC=5.4.99.- RuleBase RU003887

Gene names

Ordered Locus Names:

cu1088

Organism

Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) [Complete proteome] [HAMAP] EMBL CAQ05048.1

Taxonomic identifier

504474 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Corynebacteriaceae › Corynebacterium › Corynebacterium urealyticum

Protein attributes

Sequence length	291 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rsuA family. RuleBase RU003887 Contains 1 S4 RNA-binding domain. SAAS SAAS006145

Ontologies

Keywords
Ligand	RNA-binding SAAS SAAS006145
Molecular function	Isomerase SAAS SAAS006145 RuleBase RU003887
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: UniProtKB-KW pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1VH07 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: F44EB50CFF9F9C53	FASTA	291	31,980
	10 20 30 40 50 60 MNTPARRDGI PEKNAAKPGG AETFVPKAKP ARHQHVTKSE QKAAPAAEDK VRLQKVLAAA 70 80 90 100 110 120 GVASRRMSEK LIAAGRVEVN GKVVDRMGVR IDPNKDVVRV DGVRVQVNDE MHYYIFNKPR 130 140 150 160 170 180 GVQSTMSDDM GRPSVGNFID ERLKQGQGLF HVGRLDAQTE GLLLLTNDGE LANRLMHPSY 190 200 210 220 230 240 EVSKTYMATV LGEAKKGLVH ELKKGIELDD GIAKADDVQI VDVWQGKSLI KLELHEGRKH 250 260 270 280 290 IVRRLLKAAG FPVQALVRTK IHTVQLGDQK PGSVRALNRS ELTSLYKAVG L

References

[1]

"The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing." Tauch A., Trost E., Tilker A., Ludewig U., Schneiker S., Goesmann A., Arnold W., Bekel T., Brinkrolf K., Brune I., Goetker S., Kalinowski J., Kamp P.-B., Lobo F.P., Viehoever P., Weisshaar B., Soriano F., Droege M., Puehler A. J. Biotechnol. 136:11-21(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43042 / DSM 7109.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM942444 Genomic DNA. Translation: CAQ05048.1.
RefSeq	YP_001800482.1. NC_010545.1.
3D structure databases
ProteinModelPortal	B1VH07.
ModBase	Search...
Protein-protein interaction databases
STRING	504474.cur_1088.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAQ05048; CAQ05048; cu1088.
GeneID	6186443.
KEGG	cur:cur_1088.
PATRIC	21521920. VBICorUre58120_1087.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1187.
KO	K06178.
OMA	CEEMITE.
ProtClustDB	CLSK2464115.
Enzyme and pathway databases
BioCyc	CURE504474:GJ8Y-1113-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR000748. PsdUridine_synth_RsuA/RluB/E/F. IPR018496. PsdUridine_synth_RsuA/RluB_CS. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00093. TIGR00093. 1 hit.
PROSITE	PS01149. PSI_RSU. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1VH07_CORU7

Accession

Primary (citable) accession number: B1VH07

Entry history

Integrated into UniProtKB/TrEMBL:	May 20, 2008
Last sequence update:	May 20, 2008
Last modified:	May 1, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)