B1VGW9 (B1VGW9_CORU7) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribonuclease PH HAMAP MF_00564
Short name=RNase PH HAMAP MF_00564
EC=2.7.7.56 HAMAP MF_00564

Alternative name(s):
tRNA nucleotidyltransferase HAMAP MF_00564

Gene names

Name:	rph HAMAP MF_00564
Ordered Locus Names:	cu1466

Organism

Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) [Complete proteome] [HAMAP]

Taxonomic identifier

504474 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Corynebacteriaceae › Corynebacterium

Protein attributes

Sequence length	257 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP MF_00564 SAAS SAAS018336
Catalytic activity	tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP MF_00564 SAAS SAAS018336
Sequence similarities	Belongs to the RNase PH family. HAMAP MF_00564

Ontologies

Keywords
Biological process	tRNA processing HAMAP MF_00564 SAAS SAAS018336
Molecular function	Nucleotidyltransferase HAMAP MF_00564 SAAS SAAS018336 EMBL CAQ05426.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	tRNA processing Inferred from electronic annotation. Source: HAMAP
Molecular function	tRNA binding Inferred from electronic annotation. Source: HAMAP tRNA nucleotidyltransferase activity Inferred from electronic annotation. Source: HAMAP tRNA-specific ribonuclease activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1VGW9 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: F99DF512B5B608E0	FASTA	257	27,649
	10 20 30 40 50 60 MSNTPEQSTH TRADGRSVDQ LRDIRITRRF TTNPAGSVLV EFGNTRVMCT ASVELGVPRF 70 80 90 100 110 120 KRDSGEGWLT AEYAMLPSAT HERMPRESMR GKVKGRTHEI SRLVGRALRA AVDLTELGEN 130 140 150 160 170 180 TIAIDCDVLQ ADGGTRTAAI TGAYVALADA LAYLQEQGVV PGKPLRAPVA AVSVGIIDGV 190 200 210 220 230 240 ACLDLPYEED SRADVDMNVV MTKAGRFVEI QGTGEAAEFD RAELNTMLDL AEGGLHQLIE 250 LQERALNTDP ASGPVTL

References

[1]

"The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing." Tauch A., Trost E., Tilker A., Ludewig U., Schneiker S., Goesmann A., Arnold W., Bekel T., Brinkrolf K., Brune I., Goetker S., Kalinowski J., Kamp P.-B., Lobo F.P., Viehoever P., Weisshaar B., Soriano F., Droege M., Puehler A. J. Biotechnol. 136:11-21(2008) [PubMed: 18367281] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43042 / DSM 7109.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM942444 Genomic DNA. Translation: CAQ05426.1.
RefSeq	YP_001800860.1. NC_010545.1.
3D structure databases
ProteinModelPortal	B1VGW9.
SMR	B1VGW9. Positions 12-246.
ModBase	Search...
Protein-protein interaction databases
STRING	B1VGW9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6185840.
GenomeReviews	Gene locus cu1466 in contig AM942444_GR.
KEGG	cur:cur_1466.
PATRIC	21522690. VBICorUre58120_1458.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG737187.
OMA	MLPRATG.
ProtClustDB	PRK00173.
Family and domain databases
HAMAP	MF_00564. RNase_PH. [Tree]
InterPro	IPR001247. ExoRNase_PH_dom1. IPR015847. ExoRNase_PH_dom2. IPR020568. Ribosomal_S5_D2-typ_fold. IPR002381. RNase_PH_bac-type. IPR018336. RNase_PH_CS. [Graphical view]
KO	K00989.
Pfam	PF01138. RNase_PH. 1 hit. PF03725. RNase_PH_C. 1 hit. [Graphical view]
SUPFAM	SSF55666. 3_ExoRNase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMs	TIGR01966. RNasePH. 1 hit.
PROSITE	PS01277. RIBONUCLEASE_PH. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1VGW9_CORU7

Accession

Primary (citable) accession number: B1VGW9

Entry history

Integrated into UniProtKB/TrEMBL:	May 20, 2008
Last sequence update:	May 20, 2008
Last modified:	January 25, 2012
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)