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B1VAN5

- PNP_PHYAS

UniProt

B1VAN5 - PNP_PHYAS

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Protein
Polyribonucleotide nucleotidyltransferase
Gene
pnp, PA0674
Organism
Phytoplasma australiense
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction By similarity.UniRule annotation

Catalytic activityi

RNA(n+1) + phosphate = RNA(n) + a nucleoside diphosphate.UniRule annotation

Cofactori

Magnesium By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi501 – 5011Magnesium By similarity
Metal bindingi507 – 5071Magnesium By similarity

GO - Molecular functioni

  1. 3'-5'-exoribonuclease activity Source: InterPro
  2. RNA binding Source: UniProtKB-HAMAP
  3. magnesium ion binding Source: UniProtKB-HAMAP
  4. polyribonucleotide nucleotidyltransferase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. RNA processing Source: InterPro
  2. mRNA catabolic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Ligandi

Magnesium, Metal-binding, RNA-binding

Enzyme and pathway databases

BioCyciPAUS59748:GJ8P-684-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Alternative name(s):
Polynucleotide phosphorylase
Short name:
PNPase
Gene namesi
Name:pnp
Ordered Locus Names:PA0674
OrganismiPhytoplasma australiense
Taxonomic identifieri59748 [NCBI]
Taxonomic lineageiBacteriaTenericutesMollicutesAcholeplasmatalesAcholeplasmataceaeCandidatus Phytoplasma16SrXII (Stolbur group)
ProteomesiUP000008323: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 710710Polyribonucleotide nucleotidyltransferaseUniRule annotation
PRO_1000192481Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi59748.PAa_0674.

Structurei

3D structure databases

ProteinModelPortaliB1VAN5.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini568 – 62861KH
Add
BLAST
Domaini638 – 71073S1 motif
Add
BLAST

Sequence similaritiesi

Contains 1 KH domain.
Contains 1 S1 motif domain.

Phylogenomic databases

eggNOGiCOG1185.
KOiK00962.
OMAiGTENTIC.
OrthoDBiEOG6WT8CC.

Family and domain databases

Gene3Di1.10.10.400. 1 hit.
2.40.50.140. 1 hit.
3.30.1370.10. 1 hit.
3.30.230.70. 2 hits.
HAMAPiMF_01595. PNPase.
InterProiIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR012340. NA-bd_OB-fold.
IPR012162. PNPase.
IPR027408. PNPase/RNase_PH_dom.
IPR015848. PNPase_PH_RNA-bd_bac/org-type.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR022967. RNA-binding_domain_S1.
[Graphical view]
PANTHERiPTHR11252. PTHR11252. 1 hit.
PfamiPF00013. KH_1. 1 hit.
PF01138. RNase_PH. 2 hits.
PF03725. RNase_PH_C. 2 hits.
[Graphical view]
PIRSFiPIRSF005499. PNPase. 1 hit.
SMARTiSM00322. KH. 1 hit.
SM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF46915. SSF46915. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF54211. SSF54211. 2 hits.
SSF54791. SSF54791. 1 hit.
SSF55666. SSF55666. 2 hits.
TIGRFAMsiTIGR03591. polynuc_phos. 1 hit.
PROSITEiPS50084. KH_TYPE_1. 1 hit.
PS50126. S1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1VAN5-1 [UniParc]FASTAAdd to Basket

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MLKQVFETTD LKNSFQVEIG TYARNVDPSV LIRFQDTVVL TTTVFSNKKN    50
NFDFLPLTVI YQEKFYAAGK IPGSFLRREG RSTDHEILSS RLIDRSLRPL 100
FPKEFRQEIQ VINTVLSSNP DFKSEIASIL GSSLSLLISE IPFFEPVAGV 150
YVAYIQNQFV INPNAQQLTN SPLHLLVAGT KKNVVMIEAH ASEVSEEMFL 200
EAIVFAHEYI KKLCLFQEDV QKKVGQTKKL IDLDAELQSL EKEFNEQYHE 250
QTRTLVANVF EQDQKNDLQV FKKKILAKAQ QKAFVKTIDQ ITFFDVEEQK 300
NYLLLIENLF QKLFNQEMRN YIIKNKKRPD KRTLEEVRNL DSQIDLLPRP 350
HGSALFTRGQ TQSLAVVTLG TLSESKIIDD LSGESNKRFM LHYNFPPFAV 400
GSIGRYAAPS RREIGHGNLA EKAILPLLPE ENDFPYAIRV VSEILESNGS 450
SSQATVCATS MSLMAAGVPL KRAVSGIAMG LFMDSKTNEY VILSDIQGLE 500
DHIGDMDLKI AGSDKGITAL QMDLKIEGIS QAILKQAFFQ AKKGRLHILE 550
HMNKTIASPR KEMSQYAPKV QMFQIKPEKI RDVIGSAGKI INQIIENHDG 600
VKIDIEQDGR IFVMHSNLET VKQAILFIKN LIQDAEVNSI YHAHISRFLN 650
DKAGNILGAF AQVSPSIEGL IRFSKAKKEN DVVKIGDKVL VKCVKINERG 700
RIDFVLISKK 710
Length:710
Mass (Da):80,156
Last modified:May 20, 2008 - v1
Checksum:i12161A596AB8036E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AM422018 Genomic DNA. Translation: CAM12008.1.
RefSeqiWP_012359136.1. NC_010544.1.
YP_001799249.1. NC_010544.1.

Genome annotation databases

EnsemblBacteriaiCAM12008; CAM12008; EBG00000298957.
GeneIDi6799005.
KEGGipal:PAa_0674.
PATRICi31993750. VBICanPhy111091_0737.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AM422018 Genomic DNA. Translation: CAM12008.1 .
RefSeqi WP_012359136.1. NC_010544.1.
YP_001799249.1. NC_010544.1.

3D structure databases

ProteinModelPortali B1VAN5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 59748.PAa_0674.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAM12008 ; CAM12008 ; EBG00000298957 .
GeneIDi 6799005.
KEGGi pal:PAa_0674.
PATRICi 31993750. VBICanPhy111091_0737.

Phylogenomic databases

eggNOGi COG1185.
KOi K00962.
OMAi GTENTIC.
OrthoDBi EOG6WT8CC.

Enzyme and pathway databases

BioCyci PAUS59748:GJ8P-684-MONOMER.

Family and domain databases

Gene3Di 1.10.10.400. 1 hit.
2.40.50.140. 1 hit.
3.30.1370.10. 1 hit.
3.30.230.70. 2 hits.
HAMAPi MF_01595. PNPase.
InterProi IPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR012340. NA-bd_OB-fold.
IPR012162. PNPase.
IPR027408. PNPase/RNase_PH_dom.
IPR015848. PNPase_PH_RNA-bd_bac/org-type.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR022967. RNA-binding_domain_S1.
[Graphical view ]
PANTHERi PTHR11252. PTHR11252. 1 hit.
Pfami PF00013. KH_1. 1 hit.
PF01138. RNase_PH. 2 hits.
PF03725. RNase_PH_C. 2 hits.
[Graphical view ]
PIRSFi PIRSF005499. PNPase. 1 hit.
SMARTi SM00322. KH. 1 hit.
SM00316. S1. 1 hit.
[Graphical view ]
SUPFAMi SSF46915. SSF46915. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF54211. SSF54211. 2 hits.
SSF54791. SSF54791. 1 hit.
SSF55666. SSF55666. 2 hits.
TIGRFAMsi TIGR03591. polynuc_phos. 1 hit.
PROSITEi PS50084. KH_TYPE_1. 1 hit.
PS50126. S1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Comparative genome analysis of 'Candidatus Phytoplasma australiense' (subgroup tuf-Australia I; rp-A) and 'Ca. Phytoplasma asteris' strains OY-M and AY-WB."
    Tran-Nguyen L.T., Kube M., Schneider B., Reinhardt R., Gibb K.S.
    J. Bacteriol. 190:3979-3991(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiPNP_PHYAS
AccessioniPrimary (citable) accession number: B1VAN5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: May 20, 2008
Last modified: September 3, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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