Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Capsid protein

Gene

ORF5

Organism
Lolium latent virus (isolate Lolium/USA/US1/-) (LoLV)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Required for genome encapsidation. Forms ribonucleoprotein complexes along with TGB1 helicase and viral RNA (By similarity).By similarity

GO - Molecular functioni

Keywordsi

Molecular functionRibonucleoprotein

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Short name:
CP
Alternative name(s):
Coat protein
Gene namesi
Name:ORF5
OrganismiLolium latent virus (isolate Lolium/USA/US1/-) (LoLV)
Taxonomic identifieri686945 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageTymoviralesAlphaflexiviridaeLolavirus
Virus hostiLolium multiflorum x Lolium perenne [TaxID: 480553]
Proteomesi
  • UP000008689 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004042691 – 293Capsid proteinAdd BLAST293

Structurei

3D structure databases

SMRiB1PS80.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the potexvirus capsid protein family.Curated

Phylogenomic databases

OrthoDBiVOG090000QE.

Family and domain databases

InterProiView protein in InterPro
IPR000052. Pltvir_coat.
PfamiView protein in Pfam
PF00286. Flexi_CP. 1 hit.
PRINTSiPR00232. POTXCARLCOAT.

Sequencei

Sequence statusi: Complete.

B1PS80-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSESKAETPS KSAEKGVASL STSAPPSSTT PTAQAKQTPP PVATTARPMA
60 70 80 90 100
SRLPRTIAAE GGGTEKKQSH LAEDRIAQYL PKQDAVDHSN LAALLQPFTE
110 120 130 140 150
ASYEREFDVK VNGIASKAEL TAVAETWASR LNVPKENSAV LAQEIAIHCY
160 170 180 190 200
HNGSSEQTDF NLKSSQVAGL NLEAAVGVIK EILTLRQFAA YYATFVWNWG
210 220 230 240 250
IKNEIPPANW VAKGYTDETK YAAFDTFSYV GSPLGLRITP TRKPTNNEYM
260 270 280 290
AASVNAREKI IQSRGKGMVT NSPMFSDGTT HQGIPLHPKL PLS
Length:293
Mass (Da):31,635
Last modified:April 29, 2008 - v1
Checksum:i9FA092FAA311DDFB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EU489641 Genomic RNA. Translation: ACA53378.1.
RefSeqiYP_001718503.1. NC_010434.1.

Genome annotation databases

GeneIDi6000101.
KEGGivg:6000101.

Entry informationi

Entry nameiCAPSD_LOLV
AccessioniPrimary (citable) accession number: B1PS80
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 8, 2011
Last sequence update: April 29, 2008
Last modified: March 15, 2017
This is version 27 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families