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Protein
Submitted name:

Topoisomerase IA

Gene

LCK_01404

Organism
Leuconostoc citreum (strain KM20)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. DNA topoisomerase type I activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA topological change Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseImported

Enzyme and pathway databases

BioCyciLCIT349519:GHNF-1427-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Topoisomerase IAImported (EC:5.99.1.2Imported)
Gene namesi
Ordered Locus Names:LCK_01404Imported
OrganismiLeuconostoc citreum (strain KM20)Imported
Taxonomic identifieri349519 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesLeuconostocaceaeLeuconostoc
ProteomesiUP000002166: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi349519.LCK_01404.

Structurei

3D structure databases

ProteinModelPortaliB1N0C6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the type IA topoisomerase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0550.
HOGENOMiHOG000052482.
KOiK03169.
OMAiWIASPKI.
OrthoDBiEOG6TJ7VF.

Family and domain databases

Gene3Di1.10.290.10. 1 hit.
1.10.460.10. 2 hits.
3.40.50.140. 1 hit.
InterProiIPR000380. Topo_IA.
IPR013497. Topo_IA_cen.
IPR013824. Topo_IA_cen_sub1.
IPR013826. Topo_IA_cen_sub3.
IPR023405. Topo_IA_core_domain.
IPR006171. Toprim_domain.
[Graphical view]
PfamiPF01131. Topoisom_bac. 1 hit.
PF01751. Toprim. 1 hit.
[Graphical view]
PRINTSiPR00417. PRTPISMRASEI.
SMARTiSM00493. TOPRIM. 1 hit.
[Graphical view]
SUPFAMiSSF56712. SSF56712. 1 hit.
PROSITEiPS50880. TOPRIM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1N0C6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPNYLILTEK PSAAANFVKA LGGKNGQFDT FTYTITNLRG HVMTLKDPEE
60 70 80 90 100
MVSEDLKKQY KSWLIKHLPW NLNDFNWART YIRQRNLRTG KVASTKQLVD
110 120 130 140 150
DLKKEAANGY DAIVIATDTD PSGEGELLAW EALEAIKWRG QVLRANFMDE
160 170 180 190 200
SVKGIQTSMQ HLRDVSDKNQ DGEYIKGESR NRWDFASMQL TRIATTAAKK
210 220 230 240 250
QGFKVVAREG RLKSVIVWQI YAQLEAIKRY VKKPYFEVKF KDLAGHIFGR
260 270 280 290 300
ITPEGDVIPW RFDSKAVAQQ DLLQYHESAV TNERYQTRTQ APGKLLDLAG
310 320 330 340 350
LAAILAPRGF SAKEVLSTYQ KMYEAQVVSY PRTEDKTVTP EQFNELLPKI
360 370 380 390 400
DQIAQVVHVD TALLTHRQPR ATHVKNQGAH GANRPGENVP TDLATLTKFG
410 420 430 440 450
ASAQAIYEVL AKNYLAMLAE DYVYDHVTAN LTDYPIFKTA YNVPVQLNFK
460 470 480 490 500
AVYDSQRAIK VDDDDETAVM GQLGPTAQPY LYEGANKKPQ APSTKWIMAF
510 520 530 540 550
LEKHNVGTGA TRVSTLSDMS RGTKAMIKET RGKLTLTETG NVSAVMVKGT
560 570 580 590 600
WIASPKITKR LFEMMDQVGR FEMTMPKLLD SVTQVVVHDM PIMVANAEQL
610 620 630 640 650
ETLLGQPKIK PKRPVSEKTT GQFKGEEITF AKEWSGHVFT DEELTKLLNG
660 670 680 690
AEISFEAKSK RGKLYTATGT MAKQTYKGRT FYGFKLKPKP KK
Length:692
Mass (Da):77,907
Last modified:April 29, 2008 - v1
Checksum:iF9AE643BC5206633
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ489736 Genomic DNA. Translation: ACA83228.1.
RefSeqiWP_004906674.1. NC_010471.1.
YP_001728672.1. NC_010471.1.

Genome annotation databases

EnsemblBacteriaiACA83228; ACA83228; LCK_01404.
GeneIDi6062554.
KEGGilci:LCK_01404.
PATRICi32616120. VBILeuCit37309_1534.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ489736 Genomic DNA. Translation: ACA83228.1.
RefSeqiWP_004906674.1. NC_010471.1.
YP_001728672.1. NC_010471.1.

3D structure databases

ProteinModelPortaliB1N0C6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi349519.LCK_01404.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACA83228; ACA83228; LCK_01404.
GeneIDi6062554.
KEGGilci:LCK_01404.
PATRICi32616120. VBILeuCit37309_1534.

Phylogenomic databases

eggNOGiCOG0550.
HOGENOMiHOG000052482.
KOiK03169.
OMAiWIASPKI.
OrthoDBiEOG6TJ7VF.

Enzyme and pathway databases

BioCyciLCIT349519:GHNF-1427-MONOMER.

Family and domain databases

Gene3Di1.10.290.10. 1 hit.
1.10.460.10. 2 hits.
3.40.50.140. 1 hit.
InterProiIPR000380. Topo_IA.
IPR013497. Topo_IA_cen.
IPR013824. Topo_IA_cen_sub1.
IPR013826. Topo_IA_cen_sub3.
IPR023405. Topo_IA_core_domain.
IPR006171. Toprim_domain.
[Graphical view]
PfamiPF01131. Topoisom_bac. 1 hit.
PF01751. Toprim. 1 hit.
[Graphical view]
PRINTSiPR00417. PRTPISMRASEI.
SMARTiSM00493. TOPRIM. 1 hit.
[Graphical view]
SUPFAMiSSF56712. SSF56712. 1 hit.
PROSITEiPS50880. TOPRIM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KM20Imported.

Entry informationi

Entry nameiB1N0C6_LEUCK
AccessioniPrimary (citable) accession number: B1N0C6
Entry historyi
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: January 7, 2015
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.