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Protein

Ribosomal RNA small subunit methyltransferase B

Gene

sun

Organism
Leuconostoc citreum (strain KM20)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

MethyltransferaseSAAS annotationImported, Transferase

Keywords - Biological processi

rRNA processingSAAS annotation

Keywords - Ligandi

RNA-bindingSAAS annotation, S-adenosyl-L-methionineSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA small subunit methyltransferase BSAAS annotation (EC:2.1.1.-SAAS annotation)
Gene namesi
Name:sunImported
Ordered Locus Names:LCK_00511Imported
OrganismiLeuconostoc citreum (strain KM20)Imported
Taxonomic identifieri349519 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesLeuconostocaceaeLeuconostoc
Proteomesi
  • UP000002166 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi349519.LCK_00511.

Structurei

3D structure databases

ProteinModelPortaliB1MXU2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini173 – 447SAM_MT_RSMB_NOPInterPro annotationAdd BLAST275

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037300.
KOiK03500.
OMAiHIGLYQL.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR018314. Fmu/NOL1/Nop2p_CS.
IPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS01153. NOL1_NOP2_SUN. 1 hit.
PS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1MXU2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDKRVYSNN PRVLAVQTLA KIKNGAYSNL QLNQVIKKHA LNDSDKRLLT
60 70 80 90 100
TLVYGVIQHR LTFDYWLTPF IKQKKIEPWV RELLYTALFQ LQYLDKIPQH
110 120 130 140 150
AIFNESIEVA KTLGHIGTAK FVTAILHNIS RQGLPDINAI QNPIQRLSVE
160 170 180 190 200
ASLPVWLIET LVKQNGEAKT RQIIGSINDA PAQAIRVNTA LSTDEAVEQA
210 220 230 240 250
LLDEHFTFVK SKVADHAYVV TGGHVAGSKA YQDGLLTLQD ESAMLPVEAL
260 270 280 290 300
QITTQVKTVL DAAAAPGGKT TQIAQYIADD ATIIALDIHA HKIRLIEANA
310 320 330 340 350
KRLRVSDKIT AQVLDARQTA NQLTTKFDRI LVDAPCSGFG LLRRKPEIRY
360 370 380 390 400
DKTLEDVMNL ASLQGEILDS VSQNVADNGM IVYSTCTILR QENDDVIARF
410 420 430 440 450
LSKHTDFELV PTMTNKALKS NRQETVLHIY PNDYHTDGFF VATLKKKTVQ
Length:450
Mass (Da):50,229
Last modified:April 29, 2008 - v1
Checksum:i9F6C1748B97F8CD8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ489736 Genomic DNA. Translation: ACA82344.1.
RefSeqiWP_012305084.1. NC_010471.1.

Genome annotation databases

EnsemblBacteriaiACA82344; ACA82344; LCK_00511.
KEGGilci:LCK_00511.
PATRICi32614299. VBILeuCit37309_0633.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ489736 Genomic DNA. Translation: ACA82344.1.
RefSeqiWP_012305084.1. NC_010471.1.

3D structure databases

ProteinModelPortaliB1MXU2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi349519.LCK_00511.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACA82344; ACA82344; LCK_00511.
KEGGilci:LCK_00511.
PATRICi32614299. VBILeuCit37309_0633.

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037300.
KOiK03500.
OMAiHIGLYQL.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR018314. Fmu/NOL1/Nop2p_CS.
IPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS01153. NOL1_NOP2_SUN. 1 hit.
PS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiB1MXU2_LEUCK
AccessioniPrimary (citable) accession number: B1MXU2
Entry historyi
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: November 30, 2016
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.