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B1MHS0 (B1MHS0_MYCA9) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Deoxyribose-phosphate aldolase HAMAP MF_00114
Short name=DERA HAMAP MF_00114
EC=4.1.2.4 HAMAP MF_00114
Alternative name(s):
2-deoxy-D-ribose 5-phosphate aldolase HAMAP MF_00114
Phosphodeoxyriboaldolase HAMAP MF_00114
Gene names
Name:deoC HAMAP MF_00114
Ordered Locus Names:MAB_4078c
OrganismMycobacterium abscessus (strain ATCC 19977 / DSM 44196) [Complete proteome] [HAMAP]
Taxonomic identifier561007 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium › Mycobacterium abscessus

Protein attributes

Sequence length218 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate By similarity. HAMAP MF_00114 SAAS SAAS022979

Catalytic activity

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. HAMAP MF_00114 SAAS SAAS022979

Pathway

Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. HAMAP MF_00114 SAAS SAAS022979

Subcellular location

Cytoplasm By similarity HAMAP MF_00114 SAAS SAAS022979.

Sequence similarities

Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. HAMAP MF_00114

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1521Schiff-base intermediate with acetaldehyde By similarity HAMAP MF_00114
Active site1821 By similarity HAMAP MF_00114

Sequences

Sequence LengthMass (Da)Tools
B1MHS0 [UniParc].

Last modified April 29, 2008. Version 1.
Checksum: 1CB2435ACF9BEBBB

FASTA21821,944
        10         20         30         40         50         60 
MAALIDHTLL KPEATPEDVR ALVAEAVDLG VLAVCVSPSM LPVLLPEGVE RLLVAGVVGF 

        70         80         90        100        110        120 
PSGKHLSSVK AHEAALAVAA GAHEIDMVID VGAAVGGDFG AVQGDIEAVR RAVPAATLKV 

       130        140        150        160        170        180 
IIESAALLER SGPEAVRAAC RASEAAGADF VKTSTGFHPA GGATVEAVRI MAETVGDRLQ 

       190        200        210 
VKASGGIRTA RDAAAMLEAG ATRLGLSGSR IVLDGFAD

« Hide

References

[1]"Acquisition of foreign virulence genes by the cystic fibrosis pathogen Mycobacterium abscessus."
Genoscope
Ripoll F., Pasek S., Schenowitz C., Dossat C., Barbe V., Rottman M., Heym B., Herrmann J.L., Daffe M., Brosch R., Risler J.L., Gaillard J.L.
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CU458896 Genomic DNA. Translation: CAM64151.1.
RefSeqYP_001704805.1. NC_010397.1.

3D structure databases

ProteinModelPortalB1MHS0.
ModBaseSearch...

Protein-protein interaction databases

STRINGB1MHS0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBMYCT00000007839; EBMYCP00000007778; EBMYCG00000007837.
GeneID5966540.
GenomeReviewsGene locus MAB_4078c in contig CU458896_GR.
KEGGmab:MAB_4078c.
PATRIC17979976. VBIMycAbs55940_4153.

Organism-specific databases

CMRSearch...

Phylogenomic databases

GeneTreeEBGT00050000017372.
HOGENOMHBG636421.
OMAIDHTNLK.

Family and domain databases

HAMAPMF_00114. DeoC_type1.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR011343. DeoC.
IPR002915. DeoC/AroFGH_arch.
IPR022979. Deoxyribose_phosphate_aldo_1.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01619.
PANTHERPTHR10889. DeoC. 1 hit.
PfamPF01791. DeoC. 1 hit.
[Graphical view]
PIRSFPIRSF001357. DeoC. 1 hit.
TIGRFAMsTIGR00126. DeoC. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB1MHS0_MYCA9
AccessionPrimary (citable) accession number: B1MHS0
Entry history
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: December 14, 2011
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info