B1LZ56 (B1LZ56_METRJ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Deoxyribose-phosphate aldolase EMBL ACB25898.1
EC=4.1.2.4 EMBL ACB25898.1

Gene names

Ordered Locus Names:

Mrad2831_3924

Organism

Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) [Complete proteome] [HAMAP]

Taxonomic identifier

426355 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Methylobacteriaceae › Methylobacterium

Protein attributes

Sequence length	243 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate By similarity. SAAS SAAS011343
Catalytic activity	2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. SAAS SAAS011343
Pathway	Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. SAAS SAAS011343

Ontologies

Keywords
Ligand	Schiff base SAAS SAAS011343
Molecular function	Lyase SAAS SAAS011343 EMBL ACB25898.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	deoxyribonucleotide catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	deoxyribose-phosphate aldolase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1LZ56 [UniParc]. Last modified April 29, 2008. Version 1. Checksum: 3A3AAC5E666FF3AE	FASTA	243	25,092
	10 20 30 40 50 60 MTDPDAGAVA RRALPLLDLT DLGETCTETK IDVLCRDAKR GGVAAICVWP RFVAQGARAL 70 80 90 100 110 120 AGTGIRIATV INFPAGGEDC ARATDDTAEA LRDGADEIDL VLPYGALLRG EAAIARDMVE 130 140 150 160 170 180 AVRDTCGSAT LKVILETGEL ADPGRIREAG RIALEAGADF LKTSTGKSPV SATPEAAEAM 190 200 210 220 230 240 LAEIRGGGRP AGLKVSGGLR SVADAATYLD LADRLMGPGW VSPATFRLGA SSLFGTLIQA REL

References

[1]

"Complete sequence of chromosome of Methylobacterium radiotolerans JCM 2831." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Mikhailova N., Marx C.J., Richardson P. Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 27329 / DSM 1819 / JCM 2831.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001001 Genomic DNA. Translation: ACB25898.1.
RefSeq	YP_001756581.1. NC_010505.1.
3D structure databases
ProteinModelPortal	B1LZ56.
ModBase	Search...
Protein-protein interaction databases
STRING	B1LZ56.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6139979.
GenomeReviews	Gene locus Mrad2831_3924 in contig CP001001_GR.
KEGG	mrd:Mrad2831_3924.
PATRIC	22576288. VBIMetRad70578_4017.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG636421.
OMA	FELVKQC.
ProtClustDB	CLSK2331439.
Family and domain databases
InterPro	IPR013785. Aldolase_TIM. IPR011343. DeoC. IPR002915. DeoC/AroFGH_arch. [Graphical view]
Gene3D	G3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KO	K01619.
PANTHER	PTHR10889. DeoC. 1 hit.
Pfam	PF01791. DeoC. 1 hit. [Graphical view]
PIRSF	PIRSF001357. DeoC. 1 hit.
TIGRFAMs	TIGR00126. DeoC. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B1LZ56_METRJ

Accession

Primary (citable) accession number: B1LZ56

Entry history

Integrated into UniProtKB/TrEMBL:	April 29, 2008
Last sequence update:	April 29, 2008
Last modified:	December 14, 2011
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)