B1LZ18 (B1LZ18_METRJ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Integration host factor subunit beta RuleBase RU003941

Gene names

Ordered Locus Names:

Mrad2831_2444

Organism

Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) [Complete proteome] [HAMAP]

Taxonomic identifier

426355 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Methylobacteriaceae › Methylobacterium

Protein attributes

Sequence length	103 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control By similarity. RuleBase RU003941 SAAS SAAS005685
Subunit structure	Heterodimer of an alpha and a beta chain By similarity. RuleBase RU003941 SAAS SAAS005685
Sequence similarities	Belongs to the bacterial histone-like protein family. RuleBase RU003939

Ontologies

Keywords
Biological process	DNA recombination RuleBase RU003941 SAAS SAAS005685 Transcription Transcription regulation RuleBase RU003941 SAAS SAAS005685 Translation regulation RuleBase RU003941 SAAS SAAS005685
Ligand	DNA-binding RuleBase RU003941 SAAS SAAS005685
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA recombination Inferred from electronic annotation. Source: UniProtKB-KW regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW regulation of translation Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1LZ18 [UniParc]. Last modified April 29, 2008. Version 1. Checksum: DB648F9036D7F9C8	FASTA	103	11,286
	10 20 30 40 50 60 MIKSELVLKI AEQNPHLYQR DVEILVNAIL DTISDALARG DRVELRGFGA FSVKRREARR 70 80 90 100 GRNPRTGAAV AVSEKAIPVF KTGKEMRQRL NAAGIGENAS AAE

References

[1]

"Complete sequence of chromosome of Methylobacterium radiotolerans JCM 2831." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Mikhailova N., Marx C.J., Richardson P. Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 27329 / DSM 1819 / JCM 2831.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001001 Genomic DNA. Translation: ACB24439.1.
RefSeq	YP_001755122.1. NC_010505.1.
3D structure databases
ProteinModelPortal	B1LZ18.
ModBase	Search...
Protein-protein interaction databases
STRING	B1LZ18.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6138484.
GenomeReviews	Gene locus Mrad2831_2444 in contig CP001001_GR.
KEGG	mrd:Mrad2831_2444.
PATRIC	22573266. VBIMetRad70578_2521.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG705085.
OMA	PEKYVPH.
ProtClustDB	CLSK2330145.
Family and domain databases
InterPro	IPR023630. DNA-bd_HU/IHF. IPR000119. Hist_DNA-bd_bac. IPR020816. Histone-like_DNA-bd_CS. IPR010992. IHF-like_DNA-bd. IPR005685. IHF_beta. [Graphical view]
Gene3D	G3DSA:4.10.520.10. Hist_DNA_bd_bac. 1 hit.
KO	K05788.
Pfam	PF00216. Bac_DNA_binding. 1 hit. [Graphical view]
PRINTS	PR01727. DNABINDINGHU.
SMART	SM00411. BHL. 1 hit. [Graphical view]
SUPFAM	SSF47729. IHF_like_DNA_bnd. 1 hit.
TIGRFAMs	TIGR00988. Hip. 1 hit.
PROSITE	PS00045. HISTONE_LIKE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1LZ18_METRJ

Accession

Primary (citable) accession number: B1LZ18

Entry history

Integrated into UniProtKB/TrEMBL:	April 29, 2008
Last sequence update:	April 29, 2008
Last modified:	December 14, 2011
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)