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B1LYF6 (B1LYF6_METRJ) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Selenide, water dikinase HAMAP MF_00625
EC=2.7.9.3 HAMAP MF_00625
Alternative name(s):
Selenium donor protein HAMAP MF_00625
Selenophosphate synthase HAMAP MF_00625
Gene names
Name:selD HAMAP MF_00625
Ordered Locus Names:Mrad2831_5393
OrganismMethylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) [Complete proteome] [HAMAP]
Taxonomic identifier426355 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Methylobacteriaceae › Methylobacterium

Protein attributes

Sequence length348 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Synthesizes selenophosphate from selenide and ATP By similarity. HAMAP MF_00625 SAAS SAAS023061

Catalytic activity

ATP + selenide + H2O = AMP + selenophosphate + phosphate. HAMAP MF_00625 SAAS SAAS023061

Cofactor

Magnesium By similarity. HAMAP MF_00625 SAAS SAAS023061

Sequence similarities

Belongs to the selenophosphate synthase 1 family. Class I subfamily. HAMAP MF_00625

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding229 – 2357ATP By similarity HAMAP MF_00625

Sites

Active site161 By similarity HAMAP MF_00625
Site191Important for catalytic activity By similarity HAMAP MF_00625

Sequences

Sequence LengthMass (Da)Tools
B1LYF6 [UniParc].

Last modified April 29, 2008. Version 1.
Checksum: F481DC9E10BA9950

FASTA34835,899
        10         20         30         40         50         60 
MSDAPRLTSL AHGGGCGCKL DPATLRQLLA QQPAAGPFER LLVGNETADD AAVWELEDGT 

        70         80         90        100        110        120 
CLIATTDFFT PMVDDPVDFG RIAATNAISD VYAMGGRPLF ALAILGMPLG KIDPEVVARI 

       130        140        150        160        170        180 
LRGGAEQCAE AGIPVAGGHS IDAPEPIYGL AVIGTCRREA VRRNADAVAG DAVLLTKALG 

       190        200        210        220        230        240 
VGVYSAAIKR ATLDEAGYRD FIATTTLLNR IGTDLAADPA VHALTDVTGF GILGHGLEIA 

       250        260        270        280        290        300 
RGAGLTLALE ADALPLLPQA EALARAGAVT GASHRNWAAF GEAVDLPADL PEWRRHLLTD 

       310        320        330        340 
PQTSGGLLVT CSADRADAIL ARVRAAGYPA AARIGRIEPG PARIRVAA

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References

[1]"Complete sequence of chromosome of Methylobacterium radiotolerans JCM 2831."
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Mikhailova N., Marx C.J., Richardson P.
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27329 / DSM 1819 / JCM 2831.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001001 Genomic DNA. Translation: ACB27340.1.
RefSeqYP_001758023.1. NC_010505.1.

3D structure databases

ProteinModelPortalB1LYF6.
ModBaseSearch...

Protein-protein interaction databases

STRINGB1LYF6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6141466.
GenomeReviewsGene locus Mrad2831_5393 in contig CP001001_GR.
KEGGmrd:Mrad2831_5393.
PATRIC22579192. VBIMetRad70578_5452.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG383791.
OMADYIAQGC.
ProtClustDBCLSK2334805.

Family and domain databases

HAMAPMF_00625. SelD.
[Tree]
InterProIPR000728. AIR_synth.
IPR010918. AIR_synth_C.
IPR016188. PurM_N-like.
IPR004536. SelD.
IPR023061. SelD_I.
[Graphical view]
KOK01008.
PfamPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMSSF56042. AIR_synth_C. 1 hit.
SSF55326. PurM_N-like. 1 hit.
TIGRFAMsTIGR00476. SelD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB1LYF6_METRJ
AccessionPrimary (citable) accession number: B1LYF6
Entry history
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: December 14, 2011
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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