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B1LJD3

- B1LJD3_ECOSM

UniProt

B1LJD3 - B1LJD3_ECOSM

Protein
Submitted name:

Alpha-amylase, periplasmic

Gene

malS

Organism
Escherichia coli (strain SMS-3-5 / SECEC)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 42 (01 Oct 2014)
      Sequence version 1 (29 Apr 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. calcium ion binding Source: InterPro

    GO - Biological processi

    1. alpha-glucan catabolic process Source: InterPro
    2. cellular oligosaccharide catabolic process Source: InterPro

    Keywords - Molecular functioni

    GlycosidaseImported, Hydrolase

    Enzyme and pathway databases

    BioCyciECOL439855:GHHB-3890-MONOMER.

    Protein family/group databases

    CAZyiGH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Alpha-amylase, periplasmicImported (EC:3.2.1.1Imported)
    Gene namesi
    Name:malSImported
    Ordered Locus Names:EcSMS35_3894Imported
    OrganismiEscherichia coli (strain SMS-3-5 / SECEC)Imported
    Taxonomic identifieri439855 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000007011: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. periplasmic space Source: InterPro

    Interactioni

    Protein-protein interaction databases

    STRINGi439855.EcSMS35_3894.

    Structurei

    3D structure databases

    ProteinModelPortaliB1LJD3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0366.
    HOGENOMiHOG000273912.
    KOiK01176.
    OMAiGQNWHSF.
    OrthoDBiEOG65QWH3.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTiSM00642. Aamy. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 2 hits.

    Sequencei

    Sequence statusi: Complete.

    B1LJD3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKLAACFLTL LPGFAVAASW TSPGFPAFSE QGTGTFVSHA QLPKGTRPLT    50
    LNFDQQCWQP ADAIKLNQML SLQPCSNTPP QWRLFRDGEY TLQLDTRSGT 100
    PTLMISIQNA VEPVASLVRE CPKWDGLPLT LDVSATFPEG AAVRDYYSQQ 150
    IAIVKNGQIT LQPAATSNGL LLLERAETDA SAPFDWHNAT VYFVLTDRFE 200
    NGDPSNDQSY GRHKDGMAEI GTFHGGDLRG LTNKLDYLQQ LGVNALWISA 250
    PFEQIHGWVG GGTKGDFPHY AYHGYYTQDW TNLDANMGRE ADLRTLVDSA 300
    HQRGIRILFD VVMNHTGYAT LADMQEFQFG ALYLSGDEVK KTLGERWSDW 350
    KPAAGQTWHS FNDYINFSDK TGWDKWWGKN WIRTDIGDYD NPGFDDLTMS 400
    LAFLPDIKTE STTASGLPVF YKNKTDTHAK VIDGFTPRDY LTHWLSQWVR 450
    DYGIDGFRVD TAKHVELPAW QQLKTEASAA LREWKKANSD KALDDKPFWM 500
    TGEAWGHGVM QSDYYRHGFD AMINFDYQEQ AAKAVDCLAQ MDTTWQQMAE 550
    KLQDFNVLSY LSSHDTRLFR EGGNKAAELL LLAPGAVQIF YGDESSRPFG 600
    PTGSDPLQGT RSDMNWQDVS GKSAASVAHW QKISQFRARH PAIGEGKQTT 650
    LSMKQGYGFV REHGDDKVLV IWAGQQ 676
    Length:676
    Mass (Da):75,828
    Last modified:April 29, 2008 - v1
    Checksum:i983E7C75509F2623
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000970 Genomic DNA. Translation: ACB20009.1.
    RefSeqiYP_001745859.1. NC_010498.1.

    Genome annotation databases

    EnsemblBacteriaiACB20009; ACB20009; EcSMS35_3894.
    GeneIDi6142972.
    KEGGiecm:EcSMS35_3894.
    PATRICi18436707. VBIEscCol6161_4036.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000970 Genomic DNA. Translation: ACB20009.1 .
    RefSeqi YP_001745859.1. NC_010498.1.

    3D structure databases

    ProteinModelPortali B1LJD3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 439855.EcSMS35_3894.

    Protein family/group databases

    CAZyi GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACB20009 ; ACB20009 ; EcSMS35_3894 .
    GeneIDi 6142972.
    KEGGi ecm:EcSMS35_3894.
    PATRICi 18436707. VBIEscCol6161_4036.

    Phylogenomic databases

    eggNOGi COG0366.
    HOGENOMi HOG000273912.
    KOi K01176.
    OMAi GQNWHSF.
    OrthoDBi EOG65QWH3.

    Enzyme and pathway databases

    BioCyci ECOL439855:GHHB-3890-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTi SM00642. Aamy. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 2 hits.
    ProtoNeti Search...

    Publicationsi

    1. "Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5."
      Fricke W.F., Wright M.S., Lindell A.H., Harkins D.M., Baker-Austin C., Ravel J., Stepanauskas R.
      J. Bacteriol. 190:6779-6794(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: SMS-3-5 / SECECImported.

    Entry informationi

    Entry nameiB1LJD3_ECOSM
    AccessioniPrimary (citable) accession number: B1LJD3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 29, 2008
    Last sequence update: April 29, 2008
    Last modified: October 1, 2014
    This is version 42 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3